Fix typos and syntax

- Also: "library" -> "package"
- Restructure the Bonsai page to create references to a
  OpenEphys.Onix1 section of the Bonsai page to address
  concerns about OpenEphys.Onix1 not being enough of a first-class
  citizen like Bonsai.Onix was

source/Getting Started/warnings.rst

@@ -28,8 +28,8 @@ Headstage Voltages
 .. warning::
    **Ensure each headstage is configured with the correct voltage.** Although
    headstages are quite tolerate of over-voltage and under-voltage conditions,
-   they are only gaurenteed to function wihtin a specified range.  When using
+   they are only guaranteed to function within a specified range.  When using
    long and/or thin tethers, the voltage drop across the cable can become
-   signficant. For more details, see :ref:`tether_voltage`.
+   significant. For more details, see :ref:`tether_voltage`.
 
 

source/Hardware Guide/Commutators/index.rst

@@ -2,7 +2,7 @@
 
 Coaxial Commutators
 ===================================
-Active, near-zero torque commutators to prevent tether twisting during freely
+Active, near-zero torque commutators prevent tether twisting during freely
 moving recordings with headstages and/or miniscopes.  This page provides a very
 brief overview of the commutators; for a more extensive walkthrough, please
 follow the documentation link for `Commutators

source/Hardware Guide/Headstages/tether-voltage.rst

@@ -4,10 +4,10 @@ Headstage Voltages
 ==============================
 Each ONIX headstage has a required operating voltage that is specified on its
 documentation page. Because ONIX hardware supports headstages that have
-different voltage requirements, it must be changed to to match the requirements
+different voltage requirements, it must be changed to match the requirements
 of the headstage that is plugged into a port. If the headstage voltage is too
-low, it will not function reliably. If the voltage is too high, it
-there will be excess heat dissipation and the headstage may be damaged.
+low, it will not function reliably. If the voltage is too high, the headstage 
+will dissipate excess heat and it may be damaged.
 
 
 Setting Headstage Voltage
@@ -16,20 +16,20 @@ The headstage voltage is set using :ref:`onidatasheet_fmc_link_control` devices
 on the :ref:`pcie_host`.  Each headstage has a minimum and maximum voltage
 requirement (e.g. 5.3 to  5.7 Volts for :ref:`headstage_64`) in order for
 circuits on the board to function properly. If the voltage is far too low, the
-host computer will not be able to detect detect the headstage. A borderline
+host computer will not be able to detect the headstage. A borderline
 voltage can still cause connectivity issues as the headstage occasionally dips
 below the level it needs to function properly.
 
-.. attention:: The :ref:`openephys_onix1ref` library automatically sets the
+.. attention:: The :ref:`openephys_onix1ref` Bonsai package automatically sets the
    headstage port voltage by default, but allows the user to override the
    voltage setting as well. The documentation linked shows how to use this
    functionality and what valid voltage ranges are for each headstage. This
    functionality has been been tuned for the tethers that are shipped with each
-   headstage. The override voltage is available when custom tethers are used
+   headstage. The voltage override is available when custom tethers are used
    (see :ref:`measure_voltage`).
 
 The voltage set in software is not identical to the voltage supplied to the
-headstage, as some voltage drop will occur over the tether connects them. The
+headstage, as some voltage drop will occur over the tether that connects them. The
 amount of voltage drop is proportional to the current draw of the headstage and
 inversely proportional to the thickness of the tether. The thin tethers used
 with ONIX headstages can result in significant voltage drops that need to be

source/Hardware Guide/Miniscopes/index.rst

@@ -10,7 +10,7 @@ UCLA Miniscope V3
 :Design Repository: https://github.com/daharoni/Miniscope_CMOS_Imaging_Sensor_PCB
 :Documentation: http://miniscope.org/index.php/Guides_and_Tutorials
 :Compatibility: :ref:`pcie_host`, :ref:`breakout`
-:Software: :ref:`openephys_onix1ref`
+:Software: :ref:`openephys_onix1ref` Bonsai package
 
 .. figure:: /_static/images/miniscopes/ucla-miniscope-v3-render.jpg
     :align: center
@@ -21,7 +21,7 @@ UCLA Miniscope V4
 :Design Repository: https://github.com/Aharoni-Lab/Miniscope-v4
 :Documentation: https://github.com/Aharoni-Lab/Miniscope-v4/wiki
 :Compatibility: :ref:`pcie_host`, :ref:`breakout`
-:Software: :ref:`openephys_onix1ref`
+:Software: :ref:`openephys_onix1ref` Bonsai package
 
 .. figure:: /_static/images/miniscopes/ucla-miniscope-v4-render.png
     :align: center

source/Hardware Guide/PCIe Host/overview.rst

@@ -33,7 +33,7 @@ The `ONIX FMC Host <https://github.com/open-ephys/onix-fmc-host>`__ module
 provides a host interface for serialized headstages and miniscopes, as well as
 general purpose analog and digital IO. It is a VITA-57.1 compliant mezzanine
 board that uses high pin-count FMC connector. In combination with a base FPGA
-board , it provides host PC communication.
+board, it provides host PC communication.
 
 - Two deserializers for any multifunction headstage conforming to the ONIX
   serialization protocol

source/Hardware Guide/PCIe Host/setup-windows.rst

@@ -118,6 +118,6 @@ Install Device Driver
 Install Software
 ---------------------------------------
 Have a look at the :ref:`software_guide` page for open-source software options. We
-recommend using :ref:`openephys_onix1ref` because it provides first class
+recommend using :ref:`bonsairef` and the :ref:`openephys_onix1ref` Bonsai package because it provides first class
 support for all ONIX hardware features. 
 

source/Software Guide/Bonsai.ONIX/GettingStarted.rst

@@ -34,7 +34,7 @@ Bonsai Learning Resources
 
     * - `ReactiveX operator definitions  <https://reactivex.io/documentation/operators.html>`__
       - Detailed information on many of the reactive operators you will find in
-        Bonsai's Reactive library, especially in the "Combinators" grouping
+        Bonsai's Reactive package, especially in the "Combinators" grouping
 
 Accessing Bonsai.ONIX Documentation
 ----------------------------------------

source/Software Guide/Bonsai.ONIX/Installation.rst

@@ -4,7 +4,7 @@
 
 Installation
 ===============================
-**Bonsai.ONIX** is a `Bonsai <https://bonsai-rx.org/>`__ library for ONIX
+**Bonsai.ONIX** is a `Bonsai <https://bonsai-rx.org/>`__ package for ONIX
 hardware and can be installed using its package manager.
 
 #. First you will need to `install Bonsai <https://bonsai-rx.org/docs/articles/installation.html>`__
@@ -24,7 +24,7 @@ hardware and can be installed using its package manager.
        :align: center
 
 #. Search for "ONIX" and install. Installing **Bonsai.ONIX.Design** will
-   install both the base **Bonsai.ONIX** library and its visualization tools.
+   install both the base **Bonsai.ONIX** package and its visualization tools.
 
    .. tip:: It is recommended to also install **Bonsai.ONIX.Design** because
        it provides a substantial set of data visualization and graphical hardware

source/Software Guide/Bonsai.ONIX/Nodes/NeuropixelsV1Device.rst

@@ -71,7 +71,7 @@ Parameters available through the property pane are as follows:
 Configuration GUI
 _________________________
 The **Neuropixels 1.0 Configuration GUI**, which is a part of the
-``Bonsai.ONIX.Design`` library, is opened by double clicking on the
+``Bonsai.ONIX.Design`` package, is opened by double clicking on the
 NeuropixelsV1Device node when editing the workflow or clicking the ellipsis
 next to the ``NeuropixelsV1Configuration`` parameter option in the property
 pane.

source/Software Guide/Bonsai.ONIX/Nodes/NeuropixelsV1eDevice.rst

@@ -77,7 +77,7 @@ Parameters available through the property pane are as follows:
 Configuration GUI
 _________________________
 The **Neuropixels 1.0e Configuration GUI**, which is a part of the
-``Bonsai.ONIX.Design`` library, is opened by double clicking on the
+``Bonsai.ONIX.Design`` package, is opened by double clicking on the
 NeuropixelsV1eDevice node when editing the workflow or clicking the ellipsis
 next to the ``NeuropixelsV1Configuration`` parameter option in the property
 pane.

source/Software Guide/Bonsai.ONIX/Nodes/ONIContext.rst

@@ -34,7 +34,7 @@ it manages (e.g. :ref:`bonsai_heartbeatdev`, :ref:`bonsai_analogiodev`, etc.). S
 facts about the :ref:`bonsai_onicontext` node are useful for understanding how
 to use it.
 
-.. figure:: /_static/bonsai/bonsai-library-architecture.jpg
+.. figure:: /_static/bonsai/bonsai-package-architecture.jpg
     :align: center
     :width: 500px
 
@@ -71,7 +71,7 @@ to use it.
 Configuration GUI
 --------------------------
 :ref:`bonsai_onicontext` configuration is performed using a GUI provided in the
-Bonsai.ONIX.Design library. It can be opened by double clicking on the
+Bonsai.ONIX.Design package. It can be opened by double clicking on the
 :ref:`bonsai_onicontext` node if Bonsai.ONIX.Design has been installed.
 
 .. image:: /_static/bonsai/onicontext/ONIContext_configuration.png

source/Software Guide/Bonsai.ONIX/Nodes/RHS2116Device.rst

@@ -102,7 +102,7 @@ Parameters available through the property pane are as follows:
 Configuration GUI
 _________________________
 The **RHS2116 Configuration GUI**, which is a part of the
-``Bonsai.ONIX.Design`` library, is opened by double clicking on the
+``Bonsai.ONIX.Design`` package, is opened by double clicking on the
 RHS2116Device node when editing the workflow or clicking the ellipsis next to
 the ``StimulusSequence`` parameter option in the property pane. It is used to
 define multichannel stimulus sequences. 

source/Software Guide/Bonsai.ONIX/index.rst

@@ -23,12 +23,12 @@ Bonsai.ONIX
     Bonsai Examples/index
 
 `Bonsai.ONIX <https://www.nuget.org/packages/Bonsai.ONIX/>`__ is a `Bonsai
-<https://bonsai-rx.org/>`__ library for ONIX hardware. This library contains
+<https://bonsai-rx.org/>`__ package for ONIX hardware. This package contains
 `Bonsai Operators <https://bonsai-rx.org/docs/articles/operators.html>`__ for
-acquiring and sending data to ONIX hardware. An additional library,
-``Bonsai.ONIX.Design``, contains GUI elements for the core library. Although it
-is possible to use ``Bonsai.ONIX`` without the GUI library, it is not
-recommended. There are three major classes of operators in the library:
+acquiring and sending data to ONIX hardware. An additional package,
+``Bonsai.ONIX.Design``, contains GUI elements for the core package. Although it
+is possible to use ``Bonsai.ONIX`` without the GUI package, it is not
+recommended. There are three major classes of operators in the package:
 
 #. :ref:`bonsai_onicontext` - This operator wraps the underlying **Acquisition Context**
    and provides access to the device table for a hardware slot. At least one of these 

source/Software Guide/Open Ephys GUI/index.rst

@@ -10,8 +10,8 @@ experiments more flexible and enjoyable. It works equally well on macOS, Linux,
 and Windows.
 
 .. note:: An ONIX plugin for the Open Ephys is in development. To access all of
-   ONIX's capabilities right now, have a look at the :ref:`Bonsai library
-   <openephys_onix1ref>`. **You can still take advantage of the GUI's excellent
+   ONIX's capabilities right now, have a look at the :ref:`openephys_onix1ref` Bonsai package.
+   **You can still take advantage of the GUI's excellent
    ephys visualizaiton tools by streaming data from Bonsai to the GUI using
    the** `Ephys Socket Plugin <https://open-ephys.github.io/gui-docs/User-Manual/Plugins/Ephys-Socket.html>`__.
 

source/Software Guide/OpenEphys.Onix1/index.rst

@@ -1,12 +1,11 @@
-.. _openephys_onix1ref:
+.. _bonsairef:
 
 Bonsai
 ========================
 
 `Bonsai <https://bonsai-rx.org/>`__ is a visual programming language (think
 LabView) for `reactive programming
-<https://en.wikipedia.org/wiki/Reactive_programming>`__. Its simple looks are
-deceiving. Bonsai is a very advanced piece of software with features such as 
+<https://en.wikipedia.org/wiki/Reactive_programming>`__ with features such as: 
 
 - Real-time compilation of workflows to machine code as they are edited
   (zero-overhead).
@@ -15,11 +14,18 @@ deceiving. Bonsai is a very advanced piece of software with features such as
 - Lots of support for all sorts of hardware outside of ONIX.
 
 Bonsai is ideal for accessing the full power of ONIX hardware and combining it
-with third-party data sources (e.g. machine visiion cameras,
+with third-party data sources (e.g. machine vision cameras,
 behavioral hardware, etc.), and for real-time processing and manipulation of
-data streams.  `OpenEphys.Onix1
-<https://open-ephys.github.io/onix1-bonsai-docs/index.html>`__ is a Bonsai
-library for ONIX hardware. This library contains `Bonsai Operators
+data streams. 
+
+.. _openephys_onix1ref:
+
+OpenEphys.Onix1
+----------------
+
+`OpenEphys.Onix1
+<https://open-ephys.github.io/onix1-bonsai-docs/index.html>`__ is the Bonsai
+package for ONIX hardware. This package contains `Bonsai Operators
 <https://bonsai-rx.org/docs/articles/operators.html>`__ for acquiring and
 sending data to ONIX hardware.
 
@@ -33,10 +39,10 @@ sending data to ONIX hardware.
         <div class="card text-center page-card">
 
             <header> 
-                <h1>Go to the ONIX library Docs <i class="fas fa-external-link"></i></h1>
+                <h1>Go to the OpenEphys.Onix1 Docs <i class="fas fa-external-link"></i></h1>
             </header>
             <img src="../../_static/images/bonsai-lettering.svg"
             class="page-card-img-marg hover-zoom" alt="OpenEphys.Onix1 bonsai
-            library documentation">
+            package documentation">
 
         </div>

source/Software Guide/index.rst

@@ -14,8 +14,8 @@
     oni-repl/index
     Bonsai.ONIX (DEPRECATED) <Bonsai.ONIX/index>
 
-:ref:`Bonsai <openephys_onix1ref>`
-    A `Bonsai <https://bonsai-rx.org/>`__ library for acquiring data from ONIX
+:ref:`Bonsai <bonsairef>`
+    :ref:`openephys_onix1ref` is a :ref:`bonsairef` package for acquiring data from ONIX
     hardware for real-time experiments. Bonsai is very good at processing the
     heterogeneous data streams produced by ONIX hardware.
 
@@ -35,5 +35,5 @@ Deprecated Software
 ___________________________________
 
 - The :ref:`bonsai_onixref` pages provide information about the original Bonsai
-  library, which has been superseded by :ref:`openephys_onix1ref`
+  package, which has been superseded by :ref:`openephys_onix1ref`