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Guidelines update #48

Merged
merged 23 commits into from
Dec 3, 2024
Merged

Guidelines update #48

merged 23 commits into from
Dec 3, 2024

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AurelienBesnier
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Added

Changed

  • The documentation configuration file conf.py with OpenAlea Guidelines.
  • Modernized the test suite.
  • Compatibility with numpy 2.0.
  • Updated code to respect guidelines.
  • Formating source files with ruff.

Fixed

  • Updating skan function to more recent versions.
  • Removed warning of test files saved with python 2 by saving them again with python 3.
  • Fixing location of data for notebook examples.

AurelienBesnier and others added 23 commits October 17, 2024 17:31
@AurelienBesnier
Adding phenotrack citation + updating skan functions to 0.11+
dab785e
@AurelienBesnier
Saving npz file with python 3
6380968
@AurelienBesnier
Updating skan fcts to 0.11
4acd5be
@AurelienBesnier
Formatting with ruff + typo fixes in documentation + removing unneede…
589ce38 
…d/dead code
@AurelienBesnier
Modernizing test suite + adding more tests
50d9ccc
@AurelienBesnier
Merge branch 'openalea:master' into master
133c390
@AurelienBesnier
Update README.md
213e3e5
@AurelienBesnier
Update README.md
1fb074b
@AurelienBesnier
[no ci] Update README + update version
6599430
@AurelienBesnier
Adding CHANGELOG.md + update documentation config
57a634d
@AurelienBesnier
Update meta.yaml
4e0a0ff
@AurelienBesnier
Adding pyproject.toml
6339115
@AurelienBesnier
Adding restriction of numpy in pyproject.toml
7b04c18
@AurelienBesnier
changing minimum python version in pyproject.toml
660b4ed
@AurelienBesnier
Adding comment for future upgrades
eb8c2ed
@AurelienBesnier
[no ci] updating code to respect guidelines
5a25f78
@AurelienBesnier
Fixing location of example data
d2d12a7
@AurelienBesnier
Adding missing deps for documentation
7fdb9d2
@AurelienBesnier
removing breaking numba jit
eb2c2a3
@AurelienBesnier
Formatting + fixing maize analysis functions
41da32f
@AurelienBesnier
Updating some outdated notebook functions
57efb1a
@AurelienBesnier
Updating some outdated notebook functions
3cdcc84
@AurelienBesnier
Merge branch 'master' into master
ff1e9c3
@christian34 christian34 merged commit 0cc0d00 into openalea:master Dec 3, 2024
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2 participants
@AurelienBesnier @christian34