Repositories list

• phageannotator

  Public
  Nextflow

  •

  MIT License

  •1•0•1•0•Updated Aug 21, 2024Aug 21, 2024

• SaIsolates

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

• bactopia

  Public
  A flexible pipeline for complete analysis of bacterial genomes

  Nextflow

  •

  MIT License

  •74•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• biobakerymgx

  Public
  Read-preprocessing, taxonomic classification, functional classification, strain analysis, and pangenome analysis using bioBakery tools

  Nextflow

  •

  MIT License

  •7•0•15•1•Updated Apr 29, 2024Apr 29, 2024

• caganalyzer

  Public
  A pipeline for identifying and analyzing co-abundant gene clusters (CAGs) in microbiome studies

  Nextflow

  •

  MIT License

  •1•0•0•0•Updated Apr 9, 2024Apr 9, 2024