Repositories list

• SymScore

  Public
  A symbolic regression-based tool for generating interpretable and accurate score tables for shortened clinical questionnaires

  Jupyter Notebook

  •0•1•0•0•Updated Dec 14, 2024Dec 14, 2024

• scLENS

  Public
  Data-driven signal detection for unbiased scRNA-seq data analysis

  Julia

  •

  MIT License

  •1•15•1•0•Updated Nov 25, 2024Nov 25, 2024

• NK_ActL

  Public
  MATLAB

  •1•0•0•0•Updated Nov 17, 2024Nov 17, 2024

• IONISE

  Public
  IONISE is a user-friendly computational package developed for the gamma model approach, specifically targeting the SEIR (Susceptible-Exposed-Infectious-Removed) model. This aims to estimate epidemiological parameters from sole confirmed case data using gamma-distributed latent and infectious periods.

  R

  •

  MIT License

  •0•5•0•0•Updated Sep 8, 2024Sep 8, 2024

• SeizureSANC

  Public
  0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

• GOBI

  Public
  MATLAB

  •7•20•0•0•Updated Jul 15, 2024Jul 15, 2024

• The-mammalian-circadian-clock-with-PER-dependent-displacement

  Public
  Mathematica

  •0•0•0•0•Updated May 14, 2024May 14, 2024

• FluxRPA

  Public
  Jupyter Notebook

  •0•0•0•0•Updated May 11, 2024May 11, 2024

• PDE_QSSA

  Public
  MATLAB

  •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

• Heterogeneous_diffusion

  Public
  NetLogo

  •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

• CircSANC

  Public
  Mathematical model for circadian regulation of sinoatrial nodal cell pacemaking function

  MATLAB

  •0•0•0•0•Updated Mar 4, 2024Mar 4, 2024

• Ultrasensitive_Switch

  Public
  Codes for simulating timeseries of mRNA based on transcriptional switch models.

  Julia

  •0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

• Collective_phospho_circadian

  Public
  MATLAB

  •0•0•0•0•Updated Jan 3, 2024Jan 3, 2024

• Density-PINNs

  Public
  This is the Python code, written in Jupyter, implementing Density Physics-Informed Neural Network (Density-PINN).

  Jupyter Notebook

  •0•0•0•0•Updated Nov 10, 2023Nov 10, 2023

• SOMNI

  Public
  Sleep data imputation package

  Jupyter Notebook

  •0•2•0•0•Updated Oct 16, 2023Oct 16, 2023

• SimMCMC

  Public
  R

  •1•0•0•0•Updated Aug 24, 2023Aug 24, 2023

• COMPILES

  Public
  COMPILES: Computational package for COMPutIng anaLytic positivE Steady states. steadyState.m is placed on this page as a preview of the code; the same file is included in COMPILES.zip

  decompositionsteady-statecrnt+ 2chemical-reaction-network-theorynetwork-translation

  MATLAB

  •0•4•0•0•Updated Jan 15, 2023Jan 15, 2023

• TOWARDZ

  Public
  TranslatiOn toward WeAkly Reversible and Deficiency Zero networks

  MATLAB

  •0•0•0•0•Updated Dec 4, 2022Dec 4, 2022

• MCQ_I

  Public
  The computational code for predicting the classification via RF based on either the MCQI-6 or the MCQI-14 .

  R

  •0•3•0•0•Updated Jun 20, 2022Jun 20, 2022

• SA_Drosophila_Clock

  Public
  MATLAB

  •1•1•0•0•Updated Feb 7, 2022Feb 7, 2022

• EndemicSIRS

  Public
  Codes for simulating endemic transitions of infectious diseases based on a modified SIRS model.

  R

  •0•0•0•0•Updated Feb 5, 2022Feb 5, 2022

• MBI

  Public
  Moment-based Bayesian inference method (MBI) for inferring cell-to-cell heterogeneity in the non-Markovian signaling process

  R

  •0•0•0•0•Updated Jan 26, 2022Jan 26, 2022

• ASSISTER

  Public
  Adaptive Simplification of StochastIc SystEm with Reversible binding

  MATLAB

  •0•1•0•0•Updated Aug 31, 2021Aug 31, 2021

• ION

  Public
  A model-based inference algorithm for biological oscillatory networks

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Aug 24, 2021Aug 24, 2021

• Phosphoswitch_Clock

  Public
  Mathematical model for mammalian circadian clock with the phosphoswitch

  Mathematica

  •0•0•0•0•Updated Feb 27, 2021Feb 27, 2021

• PER_p53

  Public
  Mathematical model describing molecular interactions between PER and p53

  Mathematica

  •0•0•0•0•Updated Feb 27, 2021Feb 27, 2021

• dual_strain_synthetic_oscillator

  Public
  Mathematical Model for Dual Strain Oscillator

  Mathematica

  •0•0•0•0•Updated Feb 27, 2021Feb 27, 2021

• CASTANET

  Public
  CASTANET: Computational package for deriving Analytical STAtionary distributions of biochemical reaction networks with NEtwork Translation.

  chemical-master-equationstationary-distributionscrnt+ 2chemical-reaction-network-theorynetwork-translation

  MATLAB

  •0•1•0•0•Updated Feb 26, 2021Feb 26, 2021

• CSS

  Public
  MATLAB

  •2•5•0•0•Updated Jan 21, 2021Jan 21, 2021

• OSA-phenotyping

  Public
  Python

  •0•1•0•0•Updated Dec 17, 2020Dec 17, 2020