Repositories list

• galaxy-tools-ibridges

  Public
  iBridges-based tools for Galaxy to interact with iRODS/YODA

  Python

  •

  MIT License

  •0•0•1•0•Updated Jan 14, 2025Jan 14, 2025

• src-component-galaxy

  Public
  Galaxy Workflow manager for SURF Research Cloud

  Jinja

  •

  GNU Lesser General Public License v2.1

  •3•0•5•0•Updated Jan 14, 2025Jan 14, 2025

• yoda

  Public
  A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

  ansibledataresearch+ 4yodairodsautomated-deploymentutrecht-university

  HTML

  •

  GNU General Public License v3.0

  •26•46•48•5•Updated Jan 14, 2025Jan 14, 2025

• yoda-portal

  Public
  Web portal for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonflaskyoda+ 1irods

  JavaScript

  •

  GNU General Public License v3.0

  •13•10•0•5•Updated Jan 14, 2025Jan 14, 2025

• dataQuest

  Public
  Python

  •

  MIT License

  •0•1•2•0•Updated Jan 14, 2025Jan 14, 2025

• CWCGG-2025-01-14Z

  Public archive
  Repository for teaching forks, branching, pull requests, and properly collaboratively writing code

  Python

  •

  MIT License

  •1•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• CWCGG-2025-01-14A

  Public archive
  Repository for teaching forks, branching, pull requests, and properly collaboratively writing code

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• msl_api

  Public
  PHP

  •1•0•0•8•Updated Jan 14, 2025Jan 14, 2025

• msl_ckan_util

  Public
  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• msl_ckan_core

  Public
  JavaScript

  •

  GNU Affero General Public License v3.0

  •1•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• wildlifenl-research

  Public
  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•7•3•Updated Jan 13, 2025Jan 13, 2025

• momentum-dataflow

  Public
  Repository for publishing website about data management practices of the Momentum project

  datadatamanagementdatageneration

  HTML

  •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

• wildlifenl

  Public
  Back-end API for the WildlifeNL project.

  Go

  •

  Mozilla Public License 2.0

  •0•0•11•0•Updated Jan 13, 2025Jan 13, 2025

• CWCGG-docenttest

  Public
  Python

  •

  MIT License

  •2•0•0•1•Updated Jan 13, 2025Jan 13, 2025

• ricgraph

  Public
  Ricgraph - Research in context graph

  visualizationmetadataenrichment+ 14graphlinked-dataharvestknowledge-graphharvest-datagraph-databaseharvester+ 7

  Python

  •

  MIT License

  •4•27•0•0•Updated Jan 13, 2025Jan 13, 2025

• raster_extraction

  Public
  Python

  •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

• epos-msl

  Public
  EPOS Multi-scale laboratories CKAN deployment

  redisansiblesolr+ 4postgresqlckanapache2epos

  Jinja

  •

  GNU General Public License v3.0

  •2•7•0•0•Updated Jan 13, 2025Jan 13, 2025

• SRC-test-workspace

  Public
  Packer definitions and scripts for generating containers and VMs mimicking SURF Research Cloud workspaces.

  research-cloud

  HCL

  •

  MIT License

  •0•3•7•0•Updated Jan 13, 2025Jan 13, 2025

• yoda-ruleset

  Public
  iRODS ruleset and policies for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonyodairods

  Python

  •

  GNU General Public License v3.0

  •13•9•0•4•Updated Jan 10, 2025Jan 10, 2025

• dataprivacyhandbook

  Public
  Repository for the Data Privacy Handbook @UtrechtUniversity, a practical guide on handling personal data in scientific research

  privacyresearchopen-science+ 4research-data-managementrdmgdprutrecht-university

  HTML

  •

  Other

  •7•11•7•0•Updated Jan 10, 2025Jan 10, 2025

• open-textbooks

  Public
  Repository to create an open textbook about creating open textbooks with Quarto, hosted on GitHub

  oerquartoopen-educational-resource+ 1open-textbook

  HTML

  •

  Creative Commons Attribution 4.0 International

  •1•2•1•0•Updated Jan 9, 2025Jan 9, 2025

• researchcloud-items

  Public
  Installation scripts for SURF ResearchCloud catalog components

  ansible-roleresearch-cloud

  Jinja

  •

  GNU General Public License v3.0

  •4•8•13•1•Updated Jan 9, 2025Jan 9, 2025

• code-carbon-r

  Public
  Implementation of CodeCarbon (python) in R-based workflows to measure the energy consumption and carbon footprint of individual snippets of code, scripts, and rendered documents (i.e., Rmd/QMD). This work is a contribution to the pilot Green Digital Skills workshop developed by the Netherlands eScience center.

  R

  •

  MIT License

  •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• containerplatform-docs

  Public
  Container Platform public documentation

  Dockerfile

  •0•1•0•0•Updated Jan 7, 2025Jan 7, 2025

• workshop-computational-reproducibility

  Public
  Material for the workshop 'Best Practices for Writing Reproducible Code'

  SCSS

  •

  Other

  •13•9•16•1•Updated Jan 6, 2025Jan 6, 2025

• PBfR_stats

  Public
  Code for creating a Quarto report of the Privacy Basics for Researchers module stats

  HTML

  •

  MIT License

  •0•0•1•0•Updated Jan 6, 2025Jan 6, 2025

• yoda-clienttools

  Public
  Client-side Yoda tools - mainly intended for data managers and key users

  yoda

  Python

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Dec 24, 2024Dec 24, 2024

• FSW-Openshift

  Public
  CSS

  •0•0•0•6•Updated Dec 24, 2024Dec 24, 2024

• ibridges-ansible

  Public
  Ansible modules for syncing data with iRODS using iBridges.

  Python

  •

  MIT License

  •0•1•4•1•Updated Dec 23, 2024Dec 23, 2024

• yoda-external-user-service

  Public
  A service that provides for external user enrollment and external user management via a HTTP API for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonyoda

  Python

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Dec 20, 2024Dec 20, 2024