Repositories list

• yatomat

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• masters-course-2024-make-agent-workshop

  Public
  MIT License

  •0•6•0•0•Updated Jan 14, 2025Jan 14, 2025

• dnaBPE

  Public
  C++

  •

  MIT License

  •0•2•0•0•Updated Dec 9, 2024Dec 9, 2024

• extracTR

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• Tools

  Public
  Python

  •0•2•0•0•Updated Sep 23, 2024Sep 23, 2024

• masters-course-2024-make-jarvis-workshop

  Public
  MIT License

  •0•1•0•0•Updated Aug 26, 2024Aug 26, 2024

• masters-course-2024-genome-bioinformatics

  Public
  Draft of the practice for genome bioinformatics

  MIT License

  •0•2•5•0•Updated Mar 28, 2024Mar 28, 2024

• masters-course-2023-data-software-tools

  Public
  HTML

  •36•2•0•0•Updated Dec 9, 2023Dec 9, 2023

• OantigenMiner

  Public
  Wonderful O-antigens Operons Finder

  bioinformaticsbacteriabacterial-genomes+ 4operonso-antigenssomatic-antigensoperon-visualization

  Jupyter Notebook

  •

  MIT License

  •0•2•1•2•Updated Sep 30, 2023Sep 30, 2023

• masters-course-2023-functional-genomics

  Public
  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Sep 15, 2023Sep 15, 2023

• XAP_2023

  Public
  X-AP: Experimental Anatomy of Python

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Sep 5, 2023Sep 5, 2023

• HiCPilot

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Aug 13, 2023Aug 13, 2023

• DecodingViralDance

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Aug 13, 2023Aug 13, 2023

• ressurectdb

  Public
  MIT License

  •0•0•0•0•Updated Jun 19, 2023Jun 19, 2023

• beyondT2T

  Public
  MIT License

  •0•0•0•0•Updated Jun 19, 2023Jun 19, 2023

• Primates

  Public
  Complete assemblies of non-human primate genomes

  Other

  •3•1•0•0•Updated May 9, 2023May 9, 2023

• Thiomargarita_magnifica

  Public
  Reassembly and annotation of Thiomargarita magnifica

  HTML

  •0•0•4•0•Updated May 1, 2023May 1, 2023

• tokenology

  Public
  DNA and tokens

  C++

  •1•0•0•0•Updated Apr 6, 2023Apr 6, 2023

• Snippets

  Public
  Python

  •0•0•0•0•Updated Apr 2, 2023Apr 2, 2023

• fastQuast

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 1, 2023Apr 1, 2023

• paniman

  Public
  Pipline for animal genome annotation

  Python

  •0•0•9•0•Updated Mar 22, 2023Mar 22, 2023

• telomere

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 16, 2023Mar 16, 2023

• Intro2PopGenomics

  Public
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts

  Shell

  •7•0•0•0•Updated Nov 22, 2022Nov 22, 2022

• mtDNA_assembly

  Public
  Scripts and data for mtDNA assembling

  Python

  •

  MIT License

  •1•0•0•0•Updated Oct 29, 2022Oct 29, 2022

• trs_intron_shift

  Public
  1•0•0•1•Updated Oct 20, 2022Oct 20, 2022

• aglab_busco

  Public
  Python

  •

  MIT License

  •1•0•0•1•Updated Oct 5, 2022Oct 5, 2022

• boechera_genome

  Public
  Repo for genome assembly of Boechera falcata

  HTML

  •

  GNU General Public License v3.0

  •1•0•1•0•Updated Jul 16, 2022Jul 16, 2022

• insplicesites

  Public
  Overview of splice sites over evolution tree

  Python

  •2•0•4•1•Updated Jul 15, 2022Jul 15, 2022

• omicron6more

  Public
  2022 summer variants of SARS-Cov-2

  1•0•0•0•Updated Jul 11, 2022Jul 11, 2022

• omicronic

  Public
  Detailed annotation of omicron variants

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Feb 26, 2022Feb 26, 2022