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@getwilds Fred Hutch Data Science Lab WILDS

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    30 repositories

    • getwilds.github.io

      Public
      WILDS Website
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •1•0•5•0•Updated Jan 20, 2025Jan 20, 2025

    • registry

      Public
      WILDS Repo Registry
      Python
      •0•0•1•0•Updated Jan 20, 2025Jan 20, 2025

    • oncarto

      Public
      🗺 A Map Room
      R
      •
      Other
      •0•2•4•0•Updated Jan 17, 2025Jan 17, 2025

    • sixtyfour

      Public
      🚚 CEO, entrepreneur
      awsraws-billingrstatsr-pkgwilds-r
      R
      •
      Other
      •2•11•23•1•Updated Jan 14, 2025Jan 14, 2025

    • ww-shapemapper

      Public
      Self-contained WDL workflow that uses Shapemapper
      WDL
      •
      MIT License
      •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

    • wilds-docker-library

      Public
      Central location for all Docker containers associated with WILDS workflows
      containerswilds-docker
      Dockerfile
      •
      MIT License
      •1•2•21•2•Updated Jan 9, 2025Jan 9, 2025

    • rls

      Public
      Row Level Security Functions for PostgreSQL and Redshift
      postgresqlrstatsredshiftrow-level-securitywilds-r
      R
      •
      Other
      •0•2•5•2•Updated Jan 8, 2025Jan 8, 2025

    • proof

      Public
      MIT License
      •0•0•22•0•Updated Dec 30, 2024Dec 30, 2024

    • ww-demo-workflows

      Public
      A repo containing workflows written in WDL to test using the Fred Hutch Cromwell configuration.
      wdl-workflowwilds-wdl
      WDL
      •
      MIT License
      •1•1•0•1•Updated Dec 16, 2024Dec 16, 2024

    • ww-sourmash

      Public
      Self-contained WDL workflow that uses Sourmash to perform similarity searches between sequence files.
      WDL
      •
      MIT License
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • .github

      Public
      0•0•2•0•Updated Dec 6, 2024Dec 6, 2024

    • guide

      Public
      WILDS Dev Guide
      documentation
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •1•3•9•1•Updated Dec 5, 2024Dec 5, 2024

    • ww-star-deseq2

      Public
      Relatively straightforward WDL workflow that executes STAR+DESeq2 on RNAseq data
      wdl-workflowwilds-wdl
      WDL
      •
      MIT License
      •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

    • proofr

      Public
      Client for the PROOF API
      r-packagewilds-r
      R
      •
      Other
      •3•1•1•0•Updated Dec 3, 2024Dec 3, 2024

    • personas

      Public
      CSS
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Oct 7, 2024Oct 7, 2024

    • badges

      Public
      WILDS Badges
      utilities
      HTML
      •0•0•1•0•Updated Sep 25, 2024Sep 25, 2024

    • cancerprof

      Public
      API Client for State Cancer Profiles
      wilds-r
      R
      •
      Other
      •3•2•16•1•Updated Sep 25, 2024Sep 25, 2024

    • rcromwell

      Public
      R client for interacting with Cromwell with WDL workflows
      workflowrworkflow-enginerstatsr-packageworkflow-managementwilds-r
      R
      •
      Other
      •2•4•8•0•Updated Sep 17, 2024Sep 17, 2024

    • rules

      Public
      WILDS Rules
      Python
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • dasl-quarto

      Public
      Quarto template for FHCC DaSL HTML report
      HTML
      •0•0•0•1•Updated Aug 9, 2024Aug 9, 2024

    • ww-sra-star

      Public
      Workflow to download paired fastqs from SRA and pass through STAR 2 pass
      wdl-workflowwilds-wdl
      WDL
      •
      MIT License
      •0•0•0•0•Updated Jul 9, 2024Jul 9, 2024

    • ww-cell-ranger

      Public
      A basic starting point for a cell ranger workflow
      wdl-workflowwilds-wdl
      WDL
      •
      MIT License
      •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

    • ww-fastq-to-cram

      Public
      Self-contained WDL workflow that converts a WGS FASTQ file into an unmapped CRAM file
      wdl-workflowwilds-wdl
      WDL
      •
      MIT License
      •1•0•0•0•Updated Jul 8, 2024Jul 8, 2024

    • ww-vc-trio

      Public
      Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them
      WDL
      •
      MIT License
      •2•1•0•0•Updated Jul 8, 2024Jul 8, 2024

    • wdl-101

      Public
      This is the repository for the WDL and JSON files accompanying the WDL 101 course.
      trainingwdl-workflow
      WDL
      •0•0•0•1•Updated Apr 10, 2024Apr 10, 2024

    • shiny-cromwell

      Public
      Shiny app for interacting with the Fred Hutch instances of Cromwell. Contact Amy Paguirigan
      shiny-appswilds-r
      R
      •
      MIT License
      •3•0•1•0•Updated Mar 27, 2024Mar 27, 2024

    • makefiles

      Public
      Makefile templates for WILDS projects
      utilities
      Makefile
      •0•0•0•0•Updated Mar 17, 2024Mar 17, 2024

    • bs

      Public
      Bootstrap Components for DASL Projects
      utilitieswilds-r
      R
      •
      Other
      •0•0•0•0•Updated Feb 8, 2024Feb 8, 2024

    • shinyauthr

      Public
      R package with shiny authentication modules, fork of shinyauthr
      R
      •
      Other
      •81•0•0•0•Updated Feb 3, 2024Feb 3, 2024

    • diy-cromwell-server

      Public
      A repo containing instructions for running a Cromwell server on Gizmo at the Fred Hutch. (Contact Amy Paguirigan for questions)
      infrastructure-services
      Shell
      •2•0•0•0•Updated Dec 30, 2022Dec 30, 2022