Repositories list

• PanSweep

  Public
  R

  •

  MIT License

  •0•0•3•1•Updated Jan 26, 2025Jan 26, 2025

• phylogenize

  Public
  A tool for phylogenetic comparison and analysis of microbe including gene's environmental association

  phylogeneticsmicrobiologyr-package+ 3population-geneticsmicrobesevolutionary-genomics

  HTML

  •0•0•1•0•Updated Jan 23, 2025Jan 23, 2025

• split_homology

  Public
  Repository for pipeline in "Human xenobiotic metabolism proteins have full-length and split homologs in the gut microbiome."

  Python

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• cirrhosis-pansweep

  Public
  Pipelines and analyses for use with PanSweep

  R

  •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

• Updated_PanSweep_Figure_Code

  Public
  R

  •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

• rnaseq-quantification-pipeline

  Public
  Developmental private RNASeq pipeline for bacterial quantification.

  Python

  •

  MIT License

  •0•0•6•0•Updated Jan 25, 2024Jan 25, 2024