changed visualization file naming for chains feature to show that lig…

… is a peptide
pharmai · Dec 16, 2024 · 7569212 · 7569212
1 parent 54c26b3
commit 7569212
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/plip/visualization/visualize.py b/plip/visualization/visualize.py
@@ -19,7 +19,7 @@ def visualize_in_pymol(plcomplex):
     pdbid = plcomplex.pdbid
     lig_members = plcomplex.lig_members
     chain = plcomplex.chain
-    if config.PEPTIDES:
+    if config.PEPTIDES or config.CHAINS:
         vis.ligname = 'PeptideChain%s' % plcomplex.chain
     if config.INTRA is not None:
         vis.ligname = 'Intra%s' % plcomplex.chain
@@ -100,7 +100,7 @@ def visualize_in_pymol(plcomplex):
         cmd.hide('cartoon', '%sLines' % plcomplex.pdbid)
         cmd.show('lines', '%sLines' % plcomplex.pdbid)
 
-    if config.PEPTIDES:
+    if config.PEPTIDES or config.CHAINS:
         filename = "%s_PeptideChain%s" % (pdbid.upper(), plcomplex.chain)
         if config.PYMOL:
             vis.save_session(config.OUTPATH, override=filename)