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Limited functionality of --no_probabilities #12

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jeremycfd opened this issue Jul 28, 2017 · 0 comments
Open

Limited functionality of --no_probabilities #12

jeremycfd opened this issue Jul 28, 2017 · 0 comments

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@jeremycfd
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The use of --no_probabilities is currently limited by the fact that compute_probs imports tcr_rearrangement_new.py or tcr_rearrangement.py (both directly and also through the importing of tcr_sampler.py). the rearrangement scripts have functions that require the existence of hard-coded probabilities files. Currently, --no_probabilities will successfully assign a probability of 1 in all cases, but the pipeline will fail in cases in which the probabilities files do not exist.

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