Adapt calibration reporting to new calibration implementation

.buildlibrary

@@ -1,4 +1,4 @@
-ValidationKey: '1420426'
+ValidationKey: '1447560'
 AutocreateReadme: yes
 AcceptedWarnings:
 - 'Warning: package ''.*'' was built under R version'
@@ -7,3 +7,5 @@ AcceptedNotes: Namespaces in Imports field not imported from\:\n *.ggplot2. .kni
   .mip. .piamPlotComparison. .purrr.
 allowLinterWarnings: no
 enforceVersionUpdate: no
+AutocreateCITATION: yes
+skipCoverage: no

.github/workflows/check.yaml

@@ -23,14 +23,14 @@ jobs:
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
           extra-packages: |
-            any::lucode2
-            any::covr
-            any::madrat
-            any::magclass
-            any::citation
-            any::gms
-            any::goxygen
-            any::GDPuc
+            lucode2
+            covr
+            madrat
+            magclass
+            citation
+            gms
+            goxygen
+            GDPuc
           # piam packages also available on CRAN (madrat, magclass, citation,
           # gms, goxygen, GDPuc) will usually have an outdated binary version
           # available; by using extra-packages we get the newest version
@@ -44,6 +44,13 @@ jobs:
           [ -f requirements.txt ] && python -m pip install --upgrade pip wheel || true
           [ -f requirements.txt ] && pip install -r requirements.txt || true
 
+      - name: Run pre-commit checks
+        shell: bash
+        run: |
+          python -m pip install pre-commit
+          python -m pip freeze --local
+          pre-commit run --show-diff-on-failure --color=always --all-files
+
       - name: Verify validation key
         shell: Rscript {0}
         run: lucode2:::validkey(stopIfInvalid = TRUE)
@@ -63,6 +70,6 @@ jobs:
         shell: Rscript {0}
         run: |
           nonDummyTests <- setdiff(list.files("./tests/testthat/"), c("test-dummy.R", "_snaps"))
-          if(length(nonDummyTests) > 0) covr::codecov(quiet = FALSE)
+          if(length(nonDummyTests) > 0 && !lucode2:::loadBuildLibraryConfig()[["skipCoverage"]]) covr::codecov(quiet = FALSE)
         env:
           NOT_CRAN: "true"

.pre-commit-config.yaml

@@ -3,7 +3,7 @@
 exclude: '^tests/testthat/_snaps/.*$'
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: 2c9f875913ee60ca25ce70243dc24d5b6415598c  # frozen: v4.6.0
+    rev: cef0300fd0fc4d2a87a85fa2093c6b283ea36f4b  # frozen: v5.0.0
     hooks:
     -   id: check-case-conflict
     -   id: check-json
@@ -15,7 +15,7 @@ repos:
     -   id: mixed-line-ending
 
 -   repo: https://github.com/lorenzwalthert/precommit
-    rev: bae853d82da476eee0e0a57960ee6b741a3b3fb7  # frozen: v0.4.3
+    rev: 3b70240796cdccbe1474b0176560281aaded97e6  # frozen: v0.4.3.9003
     hooks:
     -   id: parsable-R
     -   id: deps-in-desc
@@ -25,4 +25,4 @@ repos:
     -   id: readme-rmd-rendered
     -   id: use-tidy-description
 ci:
-    autoupdate_schedule: quarterly
+    autoupdate_schedule: weekly

CITATION.cff

@@ -2,8 +2,8 @@ cff-version: 1.2.0
 message: If you use this software, please cite it using the metadata from this file.
 type: software
 title: 'reportbrick: Reporting package for BRICK'
-version: 0.7.1
-date-released: '2024-10-10'
+version: 0.7.2
+date-released: '2025-01-17'
 abstract: This package contains BRICK-specific routines to report model results. The
   main functionality is to generate a mif-file from a given BRICK model run folder.
 authors:

DESCRIPTION

@@ -1,8 +1,8 @@
 Type: Package
 Package: reportbrick
 Title: Reporting package for BRICK
-Version: 0.7.1
-Date: 2024-10-10
+Version: 0.7.2
+Date: 2025-01-17
 Authors@R: c(
     person("Robin", "Hasse", , "robin.hasse@pik-potsdam.de",
            role = c("aut", "cre"),

NAMESPACE

@@ -49,6 +49,7 @@ importFrom(tidyr,replace_na)
 importFrom(tidyr,separate)
 importFrom(tidyr,unite)
 importFrom(utils,capture.output)
+importFrom(utils,read.csv)
 importFrom(utils,tail)
 importFrom(utils,write.csv)
 importFrom(yaml,read_yaml)