Adding Tleaf_Aci to the spectra data

plantphys · Nov 8, 2021 · 6c31b4b · 6c31b4b
1 parent bfb9395
commit 6c31b4b
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Showing 16 changed files with 24 additions and 16 deletions.
diff --git a/Datasets/Albert_et_al_2018/3_Combine_spectra_traits.R b/Datasets/Albert_et_al_2018/3_Combine_spectra_traits.R
@@ -25,6 +25,7 @@ spectra=data.frame(SampleID=spectra$BR_UID,
                         Vcmax25_JB=spectra$JB_VcmaxRef,
                         Vqmax25_JB=spectra$JB_VqmaxRef,
                         Tp25_JB=spectra$JB_TpRef,
+                        Tleaf_ACi=spectra$Tleaf,
                         Spectra=I(as.matrix(spectra[,11:2161]*100))) ## Reflectance in % (0 - 100)
 f.plot.spec(Z = spectra$Spectra,wv = 350:2500)
 

diff --git a/Datasets/Albert_et_al_2018/3_Spectra_traits.Rdata b/Datasets/Albert_et_al_2018/3_Spectra_traits.Rdata
diff --git a/Datasets/Barnes_et_al_2017/3_Combine_spectra_traits.R b/Datasets/Barnes_et_al_2017/3_Combine_spectra_traits.R
@@ -29,6 +29,7 @@ spectra=data.frame(SampleID=spectra$uniqueID,
                         Vcmax25_JB=spectra$JB_VcmaxRef,
                         Vqmax25_JB=spectra$JB_VqmaxRef,
                         Tp25_JB=spectra$JB_TpRef,
+                        Tleaf_ACi=spectra$Tleaf,
                         Spectra=I(as.matrix(spectra[,10:2160]*100)))## Reflectance in % (0-100)
 f.plot.spec(Z = spectra$Spectra,wv = 350:2500)
 

diff --git a/Datasets/Barnes_et_al_2017/3_Spectra_traits.Rdata b/Datasets/Barnes_et_al_2017/3_Spectra_traits.Rdata
diff --git a/Datasets/Burnett_et_al_2021/3_Combine_spectra_traits.R b/Datasets/Burnett_et_al_2021/3_Combine_spectra_traits.R
@@ -23,6 +23,7 @@ spectra=data.frame(SampleID=spectra$Sample_ID,
                         Vcmax25_JB=spectra$JB_VcmaxRef,
                         Vqmax25_JB=spectra$JB_VqmaxRef,
                         Tp25_JB=spectra$JB_TpRef,
+                        Tleaf_ACi=spectra$Tleaf,
                         Spectra=I(as.matrix(spectra[,2:2152]*100))) ## Reflectance in % (0-100)
 library(spectratrait)
 f.plot.spec(Z = spectra$Spectra,wv = 350:2500)

diff --git a/Datasets/Burnett_et_al_2021/3_Spectra_traits.Rdata b/Datasets/Burnett_et_al_2021/3_Spectra_traits.Rdata
diff --git a/Datasets/Lamour_et_al_2021/3_Combine_spectra_traits.R b/Datasets/Lamour_et_al_2021/3_Combine_spectra_traits.R
@@ -23,6 +23,7 @@ spectra=data.frame(SampleID=spectra$SampleID,
                         Vcmax25_JB=spectra$JB_VcmaxRef,
                         Vqmax25_JB=spectra$JB_VqmaxRef,
                         Tp25_JB=spectra$JB_TpRef,
+                        Tleaf_ACi=spectra$Tleaf,
                         Spectra=I(as.matrix(spectra[,19:2169])))## Reflectance in % (0-100)
 f.plot.spec(Z = spectra$Spectra,wv = 350:2500)
 

diff --git a/Datasets/Lamour_et_al_2021/3_Spectra_traits.Rdata b/Datasets/Lamour_et_al_2021/3_Spectra_traits.Rdata
diff --git a/Datasets/Rogers_et_al_2017/3_Combine_spectra_traits.R b/Datasets/Rogers_et_al_2017/3_Combine_spectra_traits.R
@@ -32,6 +32,7 @@ spectra=data.frame(SampleID=spectra$SampleID,
                         Vcmax25_JB=spectra$JB_VcmaxRef,
                         Vqmax25_JB=spectra$JB_VqmaxRef,
                         Tp25_JB=spectra$JB_TpRef,
+                        Tleaf_ACi=spectra$Tleaf,
                         Spectra=I(as.matrix(spectra[,36:2186])))## Reflectance in % (0-100)
 f.plot.spec(Z = spectra$Spectra,wv = 350:2500)
 

diff --git a/Datasets/Rogers_et_al_2017/3_Spectra_traits.Rdata b/Datasets/Rogers_et_al_2017/3_Spectra_traits.Rdata
diff --git a/Datasets/Rogers_et_al_2020/3_Combine_spectra_traits.R b/Datasets/Rogers_et_al_2020/3_Combine_spectra_traits.R
@@ -32,6 +32,7 @@ spectra=data.frame(SampleID=spectra$SampleID,
                         Vcmax25_JB=spectra$JB_VcmaxRef,
                         Vqmax25_JB=spectra$JB_VqmaxRef,
                         Tp25_JB=spectra$JB_TpRef,
+                        Tleaf_ACi=spectra$Tleaf,
                         Spectra=I(as.matrix(spectra[,32:2182])))## Reflectance in % (0-100)
 f.plot.spec(Z = spectra$Spectra,wv = 350:2500)
 

diff --git a/Datasets/Rogers_et_al_2020/3_Spectra_traits.Rdata b/Datasets/Rogers_et_al_2020/3_Spectra_traits.Rdata
diff --git a/Datasets/Wu_et_al_2019/3_Combine_spectra_traits.R b/Datasets/Wu_et_al_2019/3_Combine_spectra_traits.R
@@ -21,6 +21,7 @@ spectra=data.frame(SampleID=spectra$BNL_UID,
                         Vcmax25_JB=spectra$JB_VcmaxRef,
                         Vqmax25_JB=spectra$JB_VqmaxRef,
                         Tp25_JB=spectra$JB_TpRef,
+                        Tleaf_ACi=spectra$Tleaf,
                         Spectra=I(as.matrix(spectra[,11:2161]*100))) ## Reflectance in % (0-100)
 f.plot.spec(Z = spectra$Spectra,wv = 350:2500)
 

diff --git a/Datasets/Wu_et_al_2019/3_Spectra_traits.Rdata b/Datasets/Wu_et_al_2019/3_Spectra_traits.Rdata
diff --git a/Datasets/Yan_et_al_2021/3_Combine_spectra_traits.R b/Datasets/Yan_et_al_2021/3_Combine_spectra_traits.R
@@ -21,6 +21,7 @@ spectra=data.frame(SampleID=spectra$SampleID,
                         Vcmax25_JB=spectra$JB_VcmaxRef,
                         Vqmax25_JB=spectra$JB_VqmaxRef,
                         Tp25_JB=spectra$JB_TpRef,
+                        Tleaf_ACi=spectra$Tleaf,
                         Spectra=I(as.matrix(cbind(matrix(data = NA,nrow = nrow(spectra),ncol = 50),spectra[,10:2110])))) ## Reflectance in % (0-100)
 f.plot.spec(Z = spectra$Spectra,wv = 350:2500)
 

diff --git a/Datasets/Yan_et_al_2021/3_Spectra_traits.Rdata b/Datasets/Yan_et_al_2021/3_Spectra_traits.Rdata