release: 0.8.0

reanahub · Nov 30, 2021 · 9f6edde · 9f6edde
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diff --git a/AUTHORS.rst b/AUTHORS.rst
@@ -3,6 +3,7 @@ Authors
 
 The list of contributors in alphabetical order:
 
+- `Adelina Lintuluoto <https://orcid.org/0000-0002-0726-1452>`_
 - `Anton Khodak <https://orcid.org/0000-0003-3263-4553>`_
 - `Audrius Mecionis <https://orcid.org/0000-0002-3759-1663>`_
 - `Camila Diaz <https://orcid.org/0000-0001-5543-797X>`_
@@ -12,9 +13,11 @@ The list of contributors in alphabetical order:
 - `Dinos Kousidis <https://orcid.org/0000-0002-4914-4289>`_
 - `Harri Hirvonsalo <https://orcid.org/0000-0002-5503-510X>`_
 - `Jan Okraska <https://orcid.org/0000-0002-1416-3244>`_
+- `Kenyi Hurtado-Anampa <https://orcid.org/0000-0002-9779-3566>`_
 - `Leticia Wanderley <https://orcid.org/0000-0003-4649-6630>`_
 - `Lukas Heinrich <https://orcid.org/0000-0002-4048-7584>`_
 - `Marco Vidal <https://orcid.org/0000-0002-9363-4971>`_
+- `Matthew Feickert <https://orcid.org/0000-0003-4124-7862>`_
 - `Michael R. Crusoe <https://orcid.org/0000-0002-2961-9670>`_
 - `Robin Long <https://github.com/longr>`_
 - `Rokas Maciulaitis <https://orcid.org/0000-0003-1064-6967>`_

diff --git a/CHANGES.rst b/CHANGES.rst
@@ -1,21 +1,46 @@
 Changes
 =======
 
-Version 0.8.0 (UNRELEASED)
+Version 0.8.0 (2021-11-30)
 --------------------------
 
 - Users:
-    - Adds support for Snakemake workflow engine.
-- Administrators
-    - Adds new configuration to set node labels splitting workflow nodes, job nodes and session nodes
-      (``node_label_runtimebatch``, ``node_label_runtimejobs``, ``node_label_runtimesessions``).
-    - Adds a default ``kubernetes_memory_limit`` value (4Gi).
-    - Adds configuration environment variable to set workflow scheduling policy (``REANA_WORKFLOW_SCHEDULING_POLICY``).
-    - Adds configuration environment variables to set REST API rate limit values (``REANA_RATELIMIT_GUEST_USER``, ``REANA_RATELIMIT_AUTHENTICATED_USER``).
-    - Adds configuration environment variable to set a prefetch count for job status consumer (``REANA_JOB_STATUS_CONSUMER_PREFETCH_COUNT``).
-    - Adds new configuration ``quota.enabled`` to enable or disable quota accounting.
-    - Adds new configuration ``quota.termination_update_policy`` to select the resources for which the quota must be calculated.
-    - Changes Helm templates to use PostgreSQL 12.8 version.
+    - Adds support for running and validating Snakemake workflows.
+    - Adds support for ``outputs.directories`` in ``reana.yaml`` allowing to easily download output directories.
+    - Adds new command ``quota-show`` to retrieve information about total CPU and Disk usage and quota limits.
+    - Adds new command ``info`` that retrieves general information about the cluster, such as available workspace path settings.
+    - Changes ``validate`` command to add the possibility to check the workflow against server capabilities such as desired workspace path via ``--server-capabilities`` option.
+    - Changes ``list`` command to add the possibility to filter by workflow status and search by workflow name via ``--filter`` option.
+    - Changes ``list`` command to add the possibility to filter and display all the runs of a given workflow via ``-w`` option.
+    - Changes ``list`` command to stop including workflow progress and workspace size by default. Please use new options ``--include-progress`` and ``--include-workspace-size`` to show this information.
+    - Changes ``list --sessions`` command to display the status of interactive sessions.
+    - Changes ``logs`` command to display also the start and finish times of individual jobs.
+    - Changes ``ls`` command to add the possibility to filter by file name, size and last-modified values via ``--filter`` option.
+    - Changes ``du`` command to add the possibility filter by file name and size via ``--filter`` option.
+    - Changes ``delete`` command to prevent hard-deletion of workflows.
+    - Changes Yadage workflow specification loading to be done in ``reana-commons``.
+    - Changes CWL workflow engine to ``cwltool`` version ``3.1.20210628163208``.
+    - Removes support for Python 2.7. Please use Python 3.6 or higher from now on.
+- Administrators:
+    - Adds new configuration options ``node_label_runtimebatch``, ``node_label_runtimejobs``, ``node_label_runtimesessions`` allowing to set cluster node labels for splitting runtime workload into dedicated workflow batch nodes, workflow job nodes and interactive session nodes.
+    - Adds new configuration option ``workspaces.paths`` allowing to set a dictionary of available workspace paths to pairs of ``cluster_node_path:cluster_pod_mountpath`` for mounting directories from cluster nodes.
+    - Adds new configuration option ``quota.enabled`` to enable or disable CPU and Disk quota accounting for users.
+    - Adds new configuration option ``quota.termination_update_policy`` to select the quota resources such as CPU and Disk for which the quota usage will be calculated immediately at the workflow termination time.
+    - Adds new periodic cron job to update Disk quotas nightly. Useful if the ``quota.termination_update_policy`` does not include Disk quota resource.
+    - Adds configuration environment variable ``reana_server.environment.REANA_WORKFLOW_SCHEDULING_POLICY`` allowing to set workflow scheduling policy (first-in first-out, user-balanced and workflow-complexity balanced).
+    - Adds configuration environment variables ``reana_server.environment.REANA_RATELIMIT_GUEST_USER``, ``reana_server.environment.REANA_RATELIMIT_AUTHENTICATED_USER`` allowing to set REST API rate limit values.
+    - Adds configuration environment variable ``reana_server.environment.REANA_SCHEDULER_REQUEUE_SLEEP`` to set a time to wait between processing queued workflows.
+    - Adds configuration environment variable ``reana_workflow_controller.environment.REANA_JOB_STATUS_CONSUMER_PREFETCH_COUNT`` allowing to set a prefetch count for the job status consumer.
+    - Adds support for Kubernetes 1.21 version clusters.
+    - Adds default ``kubernetes_memory_limit`` value (4 GiB) that will be used for all user jobs unless they specify otherwise.
+    - Changes Helm template to use PostgreSQL 12.8 version.
+    - Changes Helm template for ``reana-db`` component to allow 300 maximum number of database connections by default.
+    - Fixes email validation procedure during ``create-admin-user`` command to recognize more permissive email address formats.
+- Developers:
+    - Changes ``git-*`` commands to add the possibility of excluding certain components via the ``--exclude-components`` option.
+    - Changes ``git-create-release-commit`` command to bump all version files in a component.
+    - Changes ``git-log`` command to show diff patch or to pass any wanted argument.
+    - Changes ``helm-upgrade-components`` command to also upgrade the image tags in ``prefetch-images.sh`` script.
 
 Version 0.7.4 (2021-07-07)
 --------------------------

diff --git a/helm/reana/Chart.yaml b/helm/reana/Chart.yaml
@@ -27,7 +27,7 @@ keywords:
   - reusable-science
 type: application
 # Chart version.
-version: 0.8.0-alpha.5
+version: 0.8.0
 kubeVersion: ">= 1.13.0-0 < 1.22.0-0"
 dependencies:
   - name: traefik

diff --git a/helm/reana/templates/NOTES.txt b/helm/reana/templates/NOTES.txt
@@ -3,7 +3,7 @@ The REANA system has been installed!
 If you are upgrading from a previous REANA release series, you may need to
 upgrade database schema now:
 
-   $ kubectl -n {{ .Release.Namespace }} exec -i -t deployment/{{ .Release.Name }}-server -- reana-db alembic upgrade
+   $ kubectl -n {{ .Release.Namespace }} exec -i -t deployment/{{ .Release.Name }}-server -c rest-api -- reana-db alembic upgrade
 
 Please see the dedicated upgrade documentation at
 <https://docs.reana.io/administration/deployment/upgrading-db/>

diff --git a/helm/reana/values.yaml b/helm/reana/values.yaml
@@ -56,38 +56,41 @@ components:
     docs_url: https://docs.reana.io
     forum_url: https://forum.reana.io
     imagePullPolicy: IfNotPresent
-    image: reanahub/reana-ui:0.8.0-alpha.4
+    image: reanahub/reana-ui:0.8.0
   reana_db:
     enabled: true
   reana_server:
     imagePullPolicy: IfNotPresent
-    image: reanahub/reana-server:0.8.0-alpha.6
+    image: reanahub/reana-server:0.8.1
     environment:
       REANA_MAX_CONCURRENT_BATCH_WORKFLOWS: 30
       REANA_SCHEDULER_REQUEUE_SLEEP: 15
       REANA_USER_EMAIL_CONFIRMATION: true
       REANA_WORKFLOW_SCHEDULING_POLICY: "fifo"
+      REANA_RATELIMIT_GUEST_USER: "20 per second"
+      REANA_RATELIMIT_AUTHENTICATED_USER: "20 per second"
     uwsgi:
       processes: 6
       threads: 4
   reana_workflow_controller:
     imagePullPolicy: IfNotPresent
-    image: reanahub/reana-workflow-controller:0.8.0-alpha.5
+    image: reanahub/reana-workflow-controller:0.8.0
     environment:
       SHARED_VOLUME_PATH: /var/reana
+      REANA_JOB_STATUS_CONSUMER_PREFETCH_COUNT: 200
   reana_workflow_engine_cwl:
-    image: reanahub/reana-workflow-engine-cwl:0.8.0-alpha.4
+    image: reanahub/reana-workflow-engine-cwl:0.8.0
   reana_workflow_engine_yadage:
-    image: reanahub/reana-workflow-engine-yadage:0.8.0-alpha.5
+    image: reanahub/reana-workflow-engine-yadage:0.8.0
   reana_workflow_engine_serial:
-    image: reanahub/reana-workflow-engine-serial:0.8.0-alpha.4
+    image: reanahub/reana-workflow-engine-serial:0.8.0
   reana_workflow_engine_snakemake:
-    image: reanahub/reana-workflow-engine-snakemake:0.8.0-alpha.2
+    image: reanahub/reana-workflow-engine-snakemake:0.8.0
   reana_job_controller:
-    image: reanahub/reana-job-controller:0.8.0-alpha.7
+    image: reanahub/reana-job-controller:0.8.0
   reana_message_broker:
     imagePullPolicy: IfNotPresent
-    image: reanahub/reana-message-broker:0.8.0-alpha.2
+    image: reanahub/reana-message-broker:0.8.0
 
 notifications:
   enabled: false

diff --git a/reana/version.py b/reana/version.py
@@ -13,4 +13,4 @@
 
 from __future__ import absolute_import, print_function
 
-__version__ = "0.8.0a5"
+__version__ = "0.8.0"
diff --git a/scripts/prefetch-images.sh b/scripts/prefetch-images.sh
@@ -11,15 +11,15 @@ for image in \
         maildev/maildev:1.1.0 \
         postgres:12.8 \
         redis:5.0.5 \
-        reanahub/reana-job-controller:0.8.0-alpha.7 \
-        reanahub/reana-message-broker:0.8.0-alpha.2 \
-        reanahub/reana-server:0.8.0-alpha.6 \
-        reanahub/reana-ui:0.8.0-alpha.4 \
-        reanahub/reana-workflow-controller:0.8.0-alpha.5 \
-        reanahub/reana-workflow-engine-cwl:0.8.0-alpha.4 \
-        reanahub/reana-workflow-engine-serial:0.8.0-alpha.4 \
-        reanahub/reana-workflow-engine-snakemake:0.8.0-alpha.2 \
-        reanahub/reana-workflow-engine-yadage:0.8.0-alpha.5 \
+        reanahub/reana-job-controller:0.8.0 \
+        reanahub/reana-message-broker:0.8.0 \
+        reanahub/reana-server:0.8.1 \
+        reanahub/reana-ui:0.8.0 \
+        reanahub/reana-workflow-controller:0.8.0 \
+        reanahub/reana-workflow-engine-cwl:0.8.0 \
+        reanahub/reana-workflow-engine-serial:0.8.0 \
+        reanahub/reana-workflow-engine-snakemake:0.8.0 \
+        reanahub/reana-workflow-engine-yadage:0.8.0 \
     ; do
         docker pull $image
         kind load docker-image $image
Original file line number	Diff line number	Diff line change
Expand Up		@@ -13,4 +13,4 @@

		from __future__ import absolute_import, print_function

		__version__ = "0.8.0a5"
		__version__ = "0.8.0"