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Meta-analysis of tetM (tetracycline antibiotic resistance gene) sequences from NCBI. The goal of this research is to compare DNA content (CG, amino acid) and other factors such as source of strain with MIC (Minimum Inhibitory Concentration). Research paper can be found here https://github.com/SMCCoder/pylogenetic-tree-project/blob/master/Project…

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Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
Project paper 5_7_2020.pdf		Project paper 5_7_2020.pdf
README.md		README.md
antibiotic_resistant_strains1.fasta		antibiotic_resistant_strains1.fasta
antibiotic_resistant_strains2.fasta		antibiotic_resistant_strains2.fasta
antibiotic_resistant_strains3.fasta		antibiotic_resistant_strains3.fasta
bacterial tetM datasets 5_3_2020.xlsx		bacterial tetM datasets 5_3_2020.xlsx
bacterial tetM datasets calculated 5_3_2020.xlsx		bacterial tetM datasets calculated 5_3_2020.xlsx
cg_mic 2020-05-04.png		cg_mic 2020-05-04.png
create-newick-tree_02292020.R		create-newick-tree_02292020.R
fitJC.txt		fitJC.txt
msa_tests_02292020.R		msa_tests_02292020.R
species 2020-05-04.png		species 2020-05-04.png
tetM_calculate_dna_attributes_05042020.R		tetM_calculate_dna_attributes_05042020.R
tetM_corr_05042020.R		tetM_corr_05042020.R
tetM_phylo_tree_05042020.R		tetM_phylo_tree_05042020.R
tetM_phylo_tree_05062020.R		tetM_phylo_tree_05062020.R
tetM_retreiving_genbank_results_tests_03122020.R		tetM_retreiving_genbank_results_tests_03122020.R
tetM_tree_example_02292020.R		tetM_tree_example_02292020.R
tetM_tree_meta_analysis_03032020.R		tetM_tree_meta_analysis_03032020.R
tetm_tree 2020-05-07.png		tetm_tree 2020-05-07.png
tetm_tree_05062020.pdf		tetm_tree_05062020.pdf
~$bacterial tetM datasets calculated 5_3_2020.xlsx		~$bacterial tetM datasets calculated 5_3_2020.xlsx