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Release notes for project v1.3.7 release
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yoda-vid committed Dec 8, 2020
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# MagellanMapper v1.3 Release Notes

## MagellanMapper v1.3.7

This is a bugfix release for MagellanMapper.

### Changes

Installation
- Fixed launch error when Javabridge is installed but Java is not

GUI
- The "Save Figure" button opens a file save dialog to configure the location, filename, and file format of saved figures
- Fixed display resolution on HiDPI screens set to fractional scaling (eg 150%; the fix requires Qt 5.14+)
- Fixed Atlas Editor non-Numpy image initial loading performance (regression introduced in v1.0.0, most notably in larger images)
- Fixed Atlas Editor to enable saving after edge interpolation

CLI
- Configure DPI of saved images using `--plot_labels dpi=<n>`
- Specify colors for NaN values through `--plot_labels nan_color=<color>` instead of through `--atlas_labels binary=<color>`, which is now only specifies colors when displaying labels as binary images to fix this display
- Defaults to saving images in PNG format, even if `--savefig <ext>` is not set
- CLI sub-arguments are now shown in `./run.py -h` (help documentation)
- Fixed saved plane filenames to use the plane index for the axis corresponding to the saved plane

Atlas refinement
- Smoothing metrics now include the filter size in metrics output
- Fixed the denominator in the smoothing displacement metric and smoothing metrics for non-existent labels

Python stats and plots
- Excludes decimal points that were likely included by floating-point errors
- Fixed mapping measurements to labels with weighting


## MagellanMapper v1.3.6

This release focuses on usability fixes. New settings settings and build tools have been added to support older Linux platforms.
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