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Remove Javabridge from requirements
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- Remove Javabridge and Python-Bioformats since their custom binaries are not currently supported for Mac arm64 platforms
- Remove extra PyPi since only these packages needed it
- Update rest of packages to current releases
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yoda-vid committed Apr 12, 2024
1 parent f8e7676 commit c8565a0
Showing 1 changed file with 35 additions and 42 deletions.
77 changes: 35 additions & 42 deletions envs/requirements.txt
Original file line number Diff line number Diff line change
@@ -1,62 +1,55 @@
--extra-index-url https://pypi.fury.io/dd8/
appdirs==1.4.4
bg-atlasapi==1.0.2
bg-space==0.6.0
certifi==2023.11.17
bg-atlasapi==1.0.3
brainglobe_space==1.0.0
certifi==2024.2.2
charset-normalizer==3.3.2
click==8.1.7
contourpy==1.2.0
contourpy==1.2.1
cycler==0.12.1
fonttools==4.44.3
future==0.18.3
idna==3.6
imagecodecs==2023.9.18
imageio==2.33.1
importlib-metadata==7.1.0
importlib-resources==6.1.1
itk==5.3.0
itk-core==5.3.0
itk-elastix==0.17.1
itk-filtering==5.3.0
itk-io==5.3.0
itk-numerics==5.3.0
itk-registration==5.3.0
itk-segmentation==5.3.0
javabridge==1.0.19.post9+gc8c12b4
fonttools==4.51.0
idna==3.7
imagecodecs==2024.1.1
imageio==2.34.0
importlib_metadata==7.1.0
importlib_resources==6.4.0
itk==5.4rc3
itk-core==5.4rc3
itk-elastix==0.19.1
itk-filtering==5.4rc3
itk-io==5.4rc3
itk-numerics==5.4rc3
itk-registration==5.4rc3
itk-segmentation==5.4rc3
kiwisolver==1.4.5
lazy_loader==0.3
lazy_loader==0.4
markdown-it-py==3.0.0
matplotlib==3.8.2
matplotlib-scalebar==0.8.1
matplotlib==3.8.4
mdurl==0.1.2
meshio==5.3.4
meshio==5.3.5
networkx==3.2.1
numpy==1.26.1
packaging==23.2
pandas==2.2.0
Pillow==10.3.0
pyamg==5.0.1
numpy==1.26.4
packaging==24.0
pandas==2.2.2
pillow==10.3.0
pyface==8.0.0
Pygments==2.17.2
pyparsing==3.1.1
pyparsing==3.1.2
PyQt5==5.15.10
PyQt5-Qt5==5.15.2
PyQt5-Qt5==5.15.13
PyQt5-sip==12.13.0
python-bioformats==4.0.7.post5+g52309d1
python-dateutil==2.8.2
pytz==2023.3.post1
PyWavelets==1.5.0
python-dateutil==2.9.0.post0
pytz==2024.1
PyYAML==6.0.1
requests==2.31.0
rich==13.7.0
rich==13.7.1
scikit-image==0.22.0
scipy==1.12.0
scipy==1.13.0
six==1.16.0
tifffile==2023.9.26
tifffile==2024.2.12
traits==6.4.3
traitsui==8.0.0
treelib==1.7.0
typing_extensions==4.8.0
typing_extensions==4.11.0
tzdata==2024.1
urllib3==2.0.7
zipp==3.17.0
urllib3==2.2.1
zipp==3.18.1

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