Fix GUI entry point on Windows and remove CLI-specific entry point

- Change the GUI entry point from `gui_scripts` to `console_scripts` because of a TraitsUI crash when using the former (see enthought/traitsui#1032, enthought/traitsui#1038)
- For simplicity, remove the `mm-cli` entry point since the `mm` entry-point also accesses the CLI when running as a `console_scripts` entry point

README.md

@@ -26,13 +26,15 @@ If you use Conda (available [here](https://docs.conda.io/en/latest/miniconda.htm
 conda env create -n mag -f https://raw.githubusercontent.com/sanderslab/magellanmapper/master/envs/environment_rel.yml
 ```
 
-To run in this new environment named `mag`:
+To run in this new environment named `mag`[^\*]:
 
 ```shell
 conda activate mag
 mm
 ```
 
+[^\*]: `mm` was added in v1.6.0 to launch from installed packages. When installed [from source](docs/install.md#developer-installs), `python run.py` still works!
+
 Or install using Pip (virtual environment [recommended](https://realpython.com/python-virtual-environments-a-primer/)):
 
 ```shell

docs/install.md

@@ -31,13 +31,7 @@ mm
 
 Conda will also install Java, which we use to read proprietary image formats.
 
-For non-graphical tasks, enter the CLI through:
-
-```shell
-mm-cli
-```
-
-The `mm` and `mm-cli` entry points were added in v1.6.0 to facilitate launching from installed packages.
+The `mm` entry points was added in v1.6.0 to facilitate launching from installed packages.
 
 ### Install using Pip
 

setup.py

@@ -38,8 +38,8 @@
     "scripts": [],
     "python_requires": ">=3.6",
     "entry_points": {
-      "console_scripts": ["mm-cli = magmap.io.cli:main"],
-      "gui_scripts": ["mm = magmap.io.load_env:launch_magmap"],
+        # gui_scripts doesn't load because of TraitsUI issue #1032
+        "console_scripts": ["mm = magmap.io.load_env:launch_magmap"],
     },
     "install_requires": [
         "scikit-image",