Added new environment variable check for sanger

sanger-pathogens · Feb 9, 2018 · 009162f · 009162f
1 parent 97bb871
commit 009162f
Show file tree

Hide file tree

Showing 2 changed files with 12 additions and 0 deletions.
diff --git a/act b/act
@@ -70,6 +70,12 @@ while [ -h "$PRG" ] ; do
 	fi
 done
 
+# Special Sanger override on chado PGUSER
+if [[ "$ARTEMIS_SANGER_DBUSER" != "" ]]
+then
+	export PGUSER=$ARTEMIS_SANGER_DBUSER
+fi
+
 #
 # Parse arguments.
 #

diff --git a/art b/art
@@ -76,6 +76,12 @@ while [ -h "$PRG" ] ; do
 	fi
 done
 
+# Special Sanger override on chado PGUSER
+if [[ "$ARTEMIS_SANGER_DBUSER" != "" ]]
+then
+	export PGUSER=$ARTEMIS_SANGER_DBUSER
+fi
+
 #
 # Parse arguments.
 #