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<li class="chapter" data-level="3.1" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#overview-1"><i class="fa fa-check"></i><b>3.1</b> Overview</a></li>
<li class="chapter" data-level="3.2" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#setup-1"><i class="fa fa-check"></i><b>3.2</b> Setup</a>
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<li class="chapter" data-level="3.2.1" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#packages"><i class="fa fa-check"></i><b>3.2.1</b> Packages</a></li>
<li class="chapter" data-level="3.2.2" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#custom-functions"><i class="fa fa-check"></i><b>3.2.2</b> Custom functions</a></li>
<li class="chapter" data-level="3.2.3" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#sample-metadata"><i class="fa fa-check"></i><b>3.2.3</b> Sample metadata</a></li>
<li class="chapter" data-level="3.2.1" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#tutorial-files"><i class="fa fa-check"></i><b>3.2.1</b> Tutorial files</a></li>
<li class="chapter" data-level="3.2.2" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#packages"><i class="fa fa-check"></i><b>3.2.2</b> Packages</a></li>
<li class="chapter" data-level="3.2.3" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#custom-functions"><i class="fa fa-check"></i><b>3.2.3</b> Custom functions</a></li>
<li class="chapter" data-level="3.2.4" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#sample-metadata"><i class="fa fa-check"></i><b>3.2.4</b> Sample metadata</a></li>
</ul></li>
<li class="chapter" data-level="3.3" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#generate-sample-x-snpgene-count-matrix"><i class="fa fa-check"></i><b>3.3</b> Generate sample x SNP:gene count matrix</a>
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87 changes: 84 additions & 3 deletions index.html
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<li class="chapter" data-level="3.1" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#overview-1"><i class="fa fa-check"></i><b>3.1</b> Overview</a></li>
<li class="chapter" data-level="3.2" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#setup-1"><i class="fa fa-check"></i><b>3.2</b> Setup</a>
<ul>
<li class="chapter" data-level="3.2.1" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#packages"><i class="fa fa-check"></i><b>3.2.1</b> Packages</a></li>
<li class="chapter" data-level="3.2.2" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#custom-functions"><i class="fa fa-check"></i><b>3.2.2</b> Custom functions</a></li>
<li class="chapter" data-level="3.2.3" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#sample-metadata"><i class="fa fa-check"></i><b>3.2.3</b> Sample metadata</a></li>
<li class="chapter" data-level="3.2.1" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#tutorial-files"><i class="fa fa-check"></i><b>3.2.1</b> Tutorial files</a></li>
<li class="chapter" data-level="3.2.2" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#packages"><i class="fa fa-check"></i><b>3.2.2</b> Packages</a></li>
<li class="chapter" data-level="3.2.3" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#custom-functions"><i class="fa fa-check"></i><b>3.2.3</b> Custom functions</a></li>
<li class="chapter" data-level="3.2.4" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#sample-metadata"><i class="fa fa-check"></i><b>3.2.4</b> Sample metadata</a></li>
</ul></li>
<li class="chapter" data-level="3.3" data-path="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html"><a href="snp-level-parent-specific-read-counts-to-allele-specific-transcription-1.html#generate-sample-x-snpgene-count-matrix"><i class="fa fa-check"></i><b>3.3</b> Generate sample x SNP:gene count matrix</a>
<ul>
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1 change: 1 addition & 0 deletions reference-keys.txt
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snp-level-parent-specific-read-counts-to-allele-specific-transcription-1
overview-1
setup-1
tutorial-files
packages
custom-functions
sample-metadata
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