Feature request: Correct cutoffs for exon count/CDS length (investigate methods)

[berntpopp]

Description:

Investigate and implement appropriate cutoffs for exon count and CDS (Coding Sequence) length in the context of the pipeline. The goal is to ensure that the cutoffs are biologically relevant and improve the accuracy of the results.

Tasks:

• Research methods for determining appropriate cutoffs for exon count and CDS length.
• Implement the chosen methods in the pipeline.
• Validate the cutoffs with test data to ensure they produce meaningful results.
• Document the rationale behind the chosen cutoffs.