Skip to content

Issues: scholl-lab/plasmicheck

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

42 Open 42 Closed
42 Open 42 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Feat: extract splice positions (exon boundaries) from alignment enhancement New feature or request
#84 opened Jan 20, 2025 by berntpopp
@berntpopp
feature request: other plasmid formats enhancement New feature or request
#83 opened Jan 20, 2025 by berntpopp
@berntpopp
Feat: filter out ambigious reads or reads mapping only to the plamid on calculation somehow enhancement New feature or request
#82 opened Jan 20, 2025 by berntpopp
@berntpopp
Bug:template files not integrated in package or not found correctly bug Something isn't working
#81 opened Jan 20, 2025 by berntpopp
@berntpopp
Chore: structure the output folders more with subfodlers enhancement New feature or request
#80 opened Jan 20, 2025 by berntpopp
@berntpopp
bug: alt has "wahr" in excel bug Something isn't working
#79 opened Jan 20, 2025 by berntpopp
@berntpopp
bug: jobs not finished in snakemake script (randomly, restart and they finish) bug Something isn't working
#78 opened Jan 20, 2025 by berntpopp
@berntpopp
bug: remove weasyprint completely bug Something isn't working
#77 opened Jan 20, 2025 by berntpopp
@berntpopp
bug: pip install -U kaleido & xlsxwriter bug Something isn't working
#76 opened Jan 20, 2025 by berntpopp
@berntpopp
bug: some xDNA files dont work bug Something isn't working
#75 opened Jan 20, 2025 by berntpopp
@berntpopp
Feature Request: Benchmarking Dataset Creation enhancement New feature or request
#72 opened Aug 14, 2024 by berntpopp
@berntpopp
2
Feature Request: Test Dataset Creation enhancement New feature or request
#71 opened Aug 14, 2024 by berntpopp minimum viable product (MVP)
@berntpopp
Feature Request: PEP8 Comments enhancement New feature or request
#69 opened Aug 14, 2024 by berntpopp
@berntpopp
Feature Request: Normalize by Splice Junction Count enhancement New feature or request
#68 opened Aug 14, 2024 by berntpopp
@berntpopp
Feature Request: Add Coverage to Summary Report enhancement New feature or request
#65 opened Aug 14, 2024 by berntpopp
@berntpopp
Feature Request: Check Coverage on Antibiotic Resistance Genes (e.g., AmpR) enhancement New feature or request
#64 opened Aug 14, 2024 by berntpopp
@berntpopp
Bug: MD5sum File Duplicates bug Something isn't working
#63 opened Aug 14, 2024 by berntpopp
@berntpopp
Feature Request: Add Scatter Plot on Top of Respective Boxplot enhancement New feature or request
#61 opened Aug 14, 2024 by berntpopp
@berntpopp
Feature request: Integrate CoverageOutsideINSERT and MismatchesNearINSERT in Summary Report enhancement New feature or request
#58 opened Aug 14, 2024 by berntpopp
5 tasks
@berntpopp
Feature request: Add Favicon to HTML Output enhancement New feature or request
#53 opened Aug 13, 2024 by berntpopp
@berntpopp
Feature request: Additional Plots for Summary Report enhancement New feature or request
#51 opened Aug 13, 2024 by berntpopp
@berntpopp
Feature request: Correct cutoffs for exon count/CDS length (investigate methods) enhancement New feature or request
#50 opened Aug 13, 2024 by berntpopp
@berntpopp
Feature request: Generate IGV sessions with references and BAMs enhancement New feature or request
#49 opened Aug 13, 2024 by berntpopp
@berntpopp
Feature request: Explore machine learning for plasmid/human classification enhancement New feature or request
#44 opened Aug 13, 2024 by berntpopp Manuscript
@berntpopp
feat: Reuse spliced alignment information based on md5sum enhancement New feature or request
#43 opened Aug 13, 2024 by berntpopp
@berntpopp
1
ProTip! What’s not been updated in a month: updated:<2024-12-21.