Fibertube Density

[VincentBeaud]

Quick description

New script that estimates the volumetric density of a set of fibertubes (How much volume is fibertubes versus how much volume is emptiness) using a uniform array of samples.

Outputs:

• Density map
• Density metrics
• Collision map. (In each voxel, the ratio of samples that arrive in two or more fibertubes)

Type of change

Check the relevant options.

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• This change requires a documentation update

Provide data, screenshots, command line to test (if relevant)

Volumetric density map

Collision density map
(Even parallel fibertubes collide here, because I used very big diameters)

Checklist

• My code follows the style guidelines of this project (run autopep8)
• I added relevant citations to scripts, modules and functions docstrings and descriptions
• I have performed a self-review of my code
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to the documentation
• My changes generate no new warnings
• I moved all functions from the script file (except the argparser and main) to scilpy modules
• I have added tests that prove my fix is effective or that my feature works
• New and existing unit tests pass locally with my changes

[VincentBeaud]

@CHrlS98 @gabknight Voici la PR pour les maps de densité et de collisions.

[codecov]

Codecov Report

Attention: Patch coverage is 86.36364% with 18 lines in your changes missing coverage. Please review.

Project coverage is 69.61%. Comparing base (0ac4461) to head (b46cc83).

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #1112      +/-   ##
==========================================
+ Coverage   69.56%   69.61%   +0.04%     
==========================================
  Files         448      449       +1     
  Lines       24078    24179     +101     
  Branches     3290     3312      +22     
==========================================
+ Hits        16751    16833      +82     
- Misses       5934     5946      +12     
- Partials     1393     1400       +7     

Components	Coverage Δ
Scripts	70.32% <82.05%> (+0.07%)	⬆️
Library	68.67% <92.59%> (+0.01%)	⬆️

[VincentBeaud]

@CHrlS98 C'est fait, je t'invite à rechecker vite vite, ça fait un bout que j'ai pas codé haha