Ignore various references without DOIs

papers/00_texderwalt/main.tex

@@ -55,7 +55,7 @@ \subsection{DOIs in bibliographies}\label{dois-in-bibliographies}
 In order to include a DOI in your bibliography, add the DOI to your bibliography
 entry as a string. For example:
 
-\begin{verbatim}
+\begin{lstlisting}[language=bibtex]
 @book{hume48,
     author = {David Hume},
     year = 1748,
@@ -64,7 +64,7 @@ \subsection{DOIs in bibliographies}\label{dois-in-bibliographies}
     publisher = {Hackett},
     doi = {10.1017/CBO9780511808432}
 }
-\end{verbatim}
+\end{lstlisting}
 
 
 \section{Citing software and websites}\label{citing-software-and-websites}
@@ -85,17 +85,17 @@ \section{Citing software and websites}\label{citing-software-and-websites}
 
 In this paper we not only terraform a desert using the package terradesert \citep{terradesert}, we also catch a sandworm with it.
 To cite a website, the following BibTeX format plus any additional tags necessary for specifying the referenced content is recommended.
-If you are citing a team, ensure that the author name is wrapped in additional braces \texttt{\{Team Name\}}, so it is not treated as an authors first and last names.
+If you are citing a team, ensure that the author name is wrapped in additional braces \texttt{\{Team Name\}}, so it is not treated as an author's first and last names.
 
-\begin{verbatim}
+\begin{lstlisting}[language=bibtex]
 @misc{terradesert,
     author = {{TerraDesert Team}},
-    title = {Code for terraforming a desert},
-    year = {2000},
-    url = {https://terradesert.com/code/},
-    note = {Accessed 1 Jan. 2000}
+    title  = {Code for terraforming a desert},
+    year   = {2000},
+    url    = {https://terradesert.com/code/},
+    note   = {Accessed 1 Jan. 2000}
 }
-\end{verbatim}
+\end{lstlisting}
 
 
 \section{Source code examples}\label{source-code-examples}

papers/00_texderwalt/mybib.bib

@@ -1,10 +1,12 @@
+# Feel free to delete these first few references, which are specific to the template:
+
 @book{hume48,
   author    = "David Hume",
   year      = "1748",
   title     = "An enquiry concerning human understanding",
   address   = "Indianapolis, IN",
   publisher = "Hackett",
-	doi       = {https://doi.org/10.1017/CBO9780511808432},
+  doi       = {https://doi.org/10.1017/CBO9780511808432},
 }
 
 @article{Atr03,
@@ -25,6 +27,7 @@ @misc{terradesert
   note    = {Accessed 1 Jan. 2000}
 }
 
+# These references may be helpful:
 
 @inproceedings{jupyter,
   abstract  = {It is increasingly necessary for researchers in all fields to write computer code, and in order to reproduce research results, it is important that this code is published. We present Jupyter notebooks, a document format for publishing code, results and explanations in a form that is both readable and executable. We discuss various tools and use cases for notebook documents.},

papers/00_texderwalt/myst.yml

@@ -24,13 +24,24 @@ project:
       corresponding: true
     - name: Cleopatra
       email: cleopatra@rome.it
+      affiliation: Ptolemaic Kingdom
   keywords:
     - terraforming
     - desert
     - numerical perspective
   # Add the abbreviations that you use in your paper here
   abbreviations:
     MyST: Markedly Structured Text
+  # It is possible to explicitly ignore the `doi-exists` check for certain citation keys
+  error_rules:
+    - rule: doi-exists
+      severity: ignore
+      keys:
+        - Atr03
+        - terradesert
+        - jupyter
+        - sklearn1
+        - sklearn2
   # A banner will be generated for you on publication, this is a placeholder
   banner: banner.png
   # The rest of the information shouldn't be modified