-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Add analysis files for publication record.
- Loading branch information
Showing
11 changed files
with
6,047 additions
and
0 deletions.
There are no files selected for viewing
Large diffs are not rendered by default.
Oops, something went wrong.
Large diffs are not rendered by default.
Oops, something went wrong.
Large diffs are not rendered by default.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,53 @@ | ||
id,kingdom,phylum,class,order,family,genus,species,keySpecies,endangered,invasive,domesticated,common,note | ||
RSFX_000000353,Metazoa,Chordata,Aves,Columbiformes,Columbidae,Columbina,Columbina_picui,yes,no,no,no,Picui Ground-Dove,likes heavily degraded forest and shrubland | ||
RSFX_000000100,Metazoa,Chordata,Aves,Cuculiformes,Crotophagidae,Crotophaga,Crotophaga_ani,yes,no,no,no,Smooth-billed Ani, | ||
RSFX_000000512,Metazoa,Chordata,Aves,Galliformes,Phasianidae,Gallus,Gallus_gallus,no,no,no,yes,Red Junglefowl,these are chickens | ||
RSFX_000001030,Metazoa,Chordata,Aves,Passeriformes,Mohoidae,Family_Mohoidae,Family_Mohoidae,no,extinct,no,no,Mohoidae,"uh, this family is extinct. Also from Hawaii" | ||
RSFX_000000242,Metazoa,Chordata,Aves,Passeriformes,Turdidae,Turdus,Turdus_cardis,no,no,yes,no,Japanese Thrush, | ||
RSFX_000000001,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,Bos_taurus,no,no,no,yes,Domestic cow, | ||
RSFX_000000801,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,Genus_Bos,no,no,no,yes,Domestic cow, | ||
RSFX_000015482,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,Bos_taurus,no,no,no,yes,Domestic cow, | ||
RSFX_000002425,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,Genus_Bos,no,no,no,yes,Domestic cow, | ||
RSFX_000018781,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,Genus_Bos,no,no,no,yes,Domestic cow, | ||
RSFX_000003738,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,Genus_Bos,no,no,no,yes,Domestic cow, | ||
RSFX_000012454,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,Genus_Bos,no,no,no,yes,Domestic cow, | ||
RSFX_000017704,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,Genus_Bos,no,no,no,yes,Domestic cow, | ||
RSFX_000021471,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,Genus_Bos,no,no,no,yes,Domestic cow, | ||
RSFX_000059328,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,Genus_Bos,no,no,no,yes,Domestic cow, | ||
RSFX_000006649,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Family_Bovidae,Family_Bovidae,no,no,no,yes,Domestic cow, | ||
RSFX_000028230,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Family_Bovidae,Family_Bovidae,no,no,no,yes,Domestic cow, | ||
RSFX_000039477,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Family_Bovidae,Family_Bovidae,no,no,no,yes,Domestic cow, | ||
RSFX_000028860,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Ovis,Ovis_aries,no,no,no,yes,sheep,sheep | ||
RSFX_000001203,Metazoa,Chordata,Mammalia,Artiodactyla,Cervidae,Family_Cervidae,Family_Cervidae,yes,UNKNOWN,no,no,Native deer,likely native deer | ||
RSFX_000010601,Metazoa,Chordata,Mammalia,Artiodactyla,Cervidae,Family_Cervidae,Family_Cervidae,yes,UNKNOWN,no,no,Native deer,likely native deer | ||
RSFX_000003044,Metazoa,Chordata,Mammalia,Artiodactyla,Suidae,Sus,Sus_scrofa,no,no,yes,no,wild boar,Eurasian species | ||
RSFX_000000117,Metazoa,Chordata,Mammalia,Artiodactyla,Tayassuidae,Pecari,Pecari_tajacu,yes,no,no,no,Collared peccary,Native | ||
RSFX_000000956,Metazoa,Chordata,Mammalia,Artiodactyla,Tayassuidae,Tayassu,Tayassu_pecari,yes,vulnerable,no,no,White-lipped peccary, | ||
RSFX_000001191,Metazoa,Chordata,Mammalia,Carnivora,Canidae,Canis,Canis_lupus,no,no,no,no,Wolf,from domestic dogs? | ||
RSFX_000001603,Metazoa,Chordata,Mammalia,Carnivora,Canidae,Canis,Canis_lupus,no,no,no,no,Wolf,from domestic dogs? | ||
RSFX_000000411,Metazoa,Chordata,Mammalia,Carnivora,Felidae,Felis,Felis_catus,no,no,yes,yes,Domestic cat, | ||
RSFX_000011166,Metazoa,Chordata,Mammalia,Carnivora,Procyonidae,Nasua,Nasua_nasua,yes,decreasing,no,no,South American coati, | ||
RSFX_000002791,Metazoa,Chordata,Mammalia,Chiroptera,Phyllostomidae,Phyllostomus,Phyllostomus_discolor,yes,no,no,no,Pale spear-nosed bat,ag areas and forests | ||
RSFX_000017716,Metazoa,Chordata,Mammalia,Chiroptera,Phyllostomidae,Uroderma,Uroderma_magnirostrum,yes,no,no,no,Brown tent-making bat, | ||
RSFX_000002822,Metazoa,Chordata,Mammalia,Cingulata,Chlamyphoridae,Family_Chlamyphoridae,Family_Chlamyphoridae,yes,UNKNOWN,no,no,Armadillo, | ||
RSFX_000002238,Metazoa,Chordata,Mammalia,Cingulata,Dasypodidae,Dasypus,Dasypus_yepesi,yes,UNKNOWN,no,no,Yungas lesser long-nosed armadillo,Range is unknown but likely Argentina. | ||
RSFX_000000307,Metazoa,Chordata,Mammalia,Didelphimorphia,Didelphidae,Marmosa,Marmosa_demerarae,yes,no,no,no,Woolly Mouse Opossum, | ||
RSFX_000000933,Metazoa,Chordata,Mammalia,Didelphimorphia,Didelphidae,Philander,Philander_opossum,yes,no,no,no,gray four-eyed opossum,"likes forest, rainforest, scrub forest" | ||
RSFX_000003498,Metazoa,Chordata,Mammalia,Perissodactyla,Equidae,Equus,Equus_caballus,no,no,no,yes,domestic horse, | ||
RSFX_000003809,Metazoa,Chordata,Mammalia,Perissodactyla,Equidae,Equus,Equus_caballus,no,no,no,yes,domestic horse, | ||
RSFX_000000087,Metazoa,Chordata,Mammalia,Primates,Atelidae,Alouatta,Genus_Alouatta,yes,decreasing,no,no,Howler monkeys, | ||
RSFX_000000187,Metazoa,Chordata,Mammalia,Primates,Pitheciidae,Plecturocebus,Plecturocebus_cupreus,yes,no,no,no,Coppery titi, | ||
RSFX_000006460,Metazoa,Chordata,Mammalia,Rodentia,Muridae,Rattus,Rattus_norvegicus,no,no,yes,no,Norway rat, | ||
RSFX_000070484,Metazoa,Chordata,Mammalia,Rodentia,Muridae,Rattus,Rattus_norvegicus,no,no,yes,no,Norway rat, | ||
GSFX_000173026,Metazoa,Chordata,Amphibia,Class_Amphibia,Class_Amphibia,Class_Amphibia,Class_Amphibia,no,no,no,no,amphibians, | ||
GSFX_000053322,Metazoa,Chordata,Aves,Class_Aves,Class_Aves,Class_Aves,Class_Aves,no,no,no,no,birds, | ||
GSFX_000000460,Metazoa,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,Bos_taurus,no,no,yes,no,cows, | ||
GSFX_000055237,Metazoa,Chordata,Mammalia,Artiodactyla,Tayassuidae,Pecari,Pecari_tajacu,no,no,no,no,collared peccary, | ||
GSFX_000319164,Metazoa,Chordata,Mammalia,Cingulata,Dasypodidae,Dasypus,Dasypus_beniensis,no,no,no,no,greater long-nosed armadillo, | ||
GSFX_000000096,Metazoa,Chordata,Mammalia,Primates,Hominidae,Homo,Homo_sapiens,no,no,yes,no,humans, | ||
GSFX_000002654,Metazoa,Chordata,Mammalia,Primates,Hominidae,Homo,Homo_sapiens,no,no,yes,no,humans, | ||
GSFX_000004995,Metazoa,Chordata,Mammalia,Primates,Hominidae,Homo,Homo_sapiens,no,no,yes,no,humans, | ||
GSFX_000000538,Metazoa,Chordata,Mammalia,Primates,Hominidae,Homo,Homo_sapiens,no,no,yes,no,humans, | ||
GSFX_000009166,Metazoa,Chordata,Mammalia,Primates,Hominidae,Homo,Homo_sapiens,no,no,yes,no,humans, | ||
GSFX_000003879,Metazoa,Chordata,Mammalia,Primates,Hominidae,Homo,Homo_sapiens,no,no,yes,no,humans, | ||
GSFX_000018818,Metazoa,Chordata,Mammalia,Primates,Hominidae,Homo,Homo_sapiens,no,no,yes,no,humans, |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,39 @@ | ||
system,site,siteEasy,recievedPlot,updatedPlot,labCode,labCode2,labCode20,riazCode2,riazCode20,cluster | ||
COCOA,SFX006-02C,Cocoa 5,SFX006-02C-01,SFX006-02C-01,SFX32,SFX32_2,SFX32_20,SFX32_2g,SFX32_20g,Cluster 1 | ||
COCOA,SFX006-02C,Cocoa 5,SFX006-02C-02,SFX006-02C-02,SFX33,SFX33_2,SFX33_20,SFX33_2g,SFX33_20g,Cluster 1 | ||
COCOA,SFX006-02C,Cocoa 5,SFX006-02C-03,SFX006-02C-03,SFX34,SFX34_2,SFX34_20,SFX34_2g,SFX34_20g,Cluster 1 | ||
COCOA,SFX006-02C,Cocoa 5,SFX006-02C-04,SFX006-02C-04,SFX35,SFX35_2,SFX35_20,SFX35_2g,SFX35_20g,Cluster 1 | ||
COCOA,SFX217-03C,Cocoa 2,SFX217-03-01,SFX217-03C-01,SFX21,SFX21_2,SFX21_20,SFX21_2g,SFX21_20g,Cluster 1 | ||
COCOA,SFX217-03C,Cocoa 2,SFX217-03-02,SFX217-03C-02,SFX22,SFX22_2,SFX22_20,SFX22_2g,SFX22_20g,Cluster 1 | ||
COCOA,SFX217-03C,Cocoa 2,SFX217-03-03,SFX217-03C-03,SFX23,SFX23_2,SFX23_20,SFX23_2g,SFX23_20g,Cluster 1 | ||
COCOA,SFX217-03C,Cocoa 2,SFX217-03-04,SFX217-03C-04,SFX24,SFX24_2,SFX24_20,SFX24_2g,SFX24_20g,Cluster 1 | ||
COCOA,SFX188-05C,Cocoa 4,SFX188-05C-01,SFX188-05C-01,SFX28,SFX28_2,SFX28_20,SFX28_2g,SFX28_20g,Cluster 2 | ||
COCOA,SFX188-05C,Cocoa 4,SFX188-05C-02,SFX188-05C-02,SFX29,SFX29_2,SFX29_20,SFX29_2g,SFX29_20g,Cluster 2 | ||
COCOA,SFX188-05C,Cocoa 4,SFX188-05C-03,SFX188-05C-03,SFX30,SFX30_2,SFX30_20,SFX30_2g,SFX30_20g,Cluster 2 | ||
COCOA,SFX188-05C,Cocoa 4,SFX188-05C-04,SFX188-05C-04,SFX31,SFX31_2,SFX31_20,SFX31_2g,SFX31_20g,Cluster 2 | ||
COCOA,SFX204-07C,Cocoa 1,SFX204-07C-01,SFX204-07C-01,SFX18,SFX18_2,SFX18_20,SFX18_2g,SFX18_20g,Cluster 1 | ||
COCOA,SFX204-07C,Cocoa 1,SFX204-07C-02,SFX204-07C-02,SFX19,SFX19_2,SFX19_20,SFX19_2g,SFX19_20g,Cluster 1 | ||
COCOA,SFX204-07C,Cocoa 1,SFX204-07C-03,SFX204-07C-03,SFX20,SFX20_2,SFX20_20,SFX20_2g,SFX20_20g,Cluster 1 | ||
COCOA,SFX225-08C,Cocoa 3,SFX225-08C-01,SFX225-08C-01,SFX25,SFX25_2,SFX25_20,SFX25_2g,SFX25_20g,Cluster 1 | ||
COCOA,SFX225-08C,Cocoa 3,SFX225-08C-03,SFX225-08C-03,SFX26,SFX26_2,SFX26_20,SFX26_2g,SFX26_20g,Cluster 1 | ||
COCOA,SFX225-08C,Cocoa 3,SFX225-08C-04,SFX225-08C-04,SFX27,SFX27_2,SFX27_20,SFX27_2g,SFX27_20g,Cluster 1 | ||
PASTURE,SFX026-01P,Pasture 3,SFX026-NOVO,SFX026-01P-01,SFX15,SFX15_2,SFX15_20,SFX15_2g,SFX15_20g,Cluster 1 | ||
PASTURE,SFX026-01P,Pasture 3,SFX026-01P-03-04 BREJO,SFX026-01P-03,SFX16,SFX16_2,SFX16_20,SFX16_2g,SFX16_20g,Cluster 1 | ||
PASTURE,SFX026-01P,Pasture 3,SFX026-01P-04-01,SFX026-01P-04,SFX17,SFX17_2,SFX17_20,SFX17_2g,SFX17_20g,Cluster 1 | ||
PASTURE,SFX051-02P,Pasture 2,SFX05-02P-01,SFX051-02P-01,SFX12,SFX12_2,SFX12_20,SFX12_2g,SFX12_20g,Cluster 1 | ||
PASTURE,SFX051-02P,Pasture 2,SFX05-02P-02,SFX051-02P-02,SFX13,SFX13_2,SFX13_20,SFX13_2g,SFX13_20g,Cluster 1 | ||
PASTURE,SFX051-02P,Pasture 2,SFX05-02P-03,SFX051-02P-03,SFX14,SFX14_2,SFX14_20,SFX14_2g,SFX14_20g,Cluster 1 | ||
PASTURE,SFX184-03P,Pasture 5,SFX184-01P.01,SFX184-03P-01,SFX4,SFX4_2,SFX4_20,SFX4_2g,SFX4_20g,Cluster 1 | ||
PASTURE,SFX184-03P,Pasture 5,SFX184-03P-02,SFX184-03P-02,SFX6,SFX6_2,SFX6_20,SFX6_2g,SFX6_20g,Cluster 1 | ||
PASTURE,SFX184-03P,Pasture 5,SFX184-03P-03,SFX184-03P-03,SFX5,SFX5_2,SFX5_20,SFX5_2g,SFX5_20g,Cluster 1 | ||
PASTURE,SFX184-03P,Pasture 5,SFX184-03P-04,SFX184-03P-04,SFX7,SFX7_2,SFX7_20,SFX7_2g,SFX7_20g,Cluster 1 | ||
PASTURE,SFX237-04P,Pasture 1,SFX237-04P-01,SFX237-04P-01,SFX8,SFX8_2,SFX8_20,SFX8_2g,SFX8_20g,Cluster 1 | ||
PASTURE,SFX237-04P,Pasture 1,SFX237-04P-02,SFX237-04P-02,SFX9,SFX9_2,SFX9_20,SFX9_2g,SFX9_20g,Cluster 1 | ||
PASTURE,SFX237-04P,Pasture 1,SFX237-04P-03,SFX237-04P-03,SFX10,SFX10_2,SFX10_20,SFX10_2g,SFX10_20g,Cluster 1 | ||
PASTURE,SFX237-04P,Pasture 1,SFX237-04P-04,SFX237-04P-04,SFX11,SFX11_2,SFX11_20,SFX11_2g,SFX11_20g,Cluster 1 | ||
PASTURE,SFX128-07P,Pasture 4,SFX128.07P-02,SFX128-07P-02,SFX1,SFX1_2,SFX1_20,SFX1_2g,SFX1_20g,Cluster 1 | ||
PASTURE,SFX128-07P,Pasture 4,SFX128.07P-03,SFX128-07P-03,SFX2,SFX2_2,SFX2_20,SFX2_2g,SFX2_20g,Cluster 1 | ||
PASTURE,SFX128-07P,Pasture 4,SFX128.07P-04,SFX128-07P-04,SFX3,SFX3_2,SFX3_20,SFX3_2g,SFX3_20g,Cluster 1 | ||
FOREST,SFX004-01F,_Forest 1,SFX004-01F,SFX004-01F-99,SFX36,SFX36_2,SFX36_20,SFX36_2g,SFX36_20g,Forest | ||
FOREST,SFX004-01F,_Forest 1,SFX004-01F-03,SFX004-01F-03,SFX37,SFX37_2,SFX37_20,SFX37_2g,SFX37_20g,Forest | ||
FOREST,SFX004-01F,_Forest 1,SFX004-01F-04,SFX004-01F-04,SFX38,SFX38_2,SFX38_20,SFX38_2g,SFX38_20g,Forest |
Oops, something went wrong.