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Revamp survival analysis interface #842

Merged
merged 27 commits into from
Jan 10, 2025
Merged

Revamp survival analysis interface #842

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b1d36b8
cox_ph add all arguments
aGuyLearning Dec 18, 2024
35dbacf
updated test to use keywords
aGuyLearning Dec 18, 2024
22d190a
weibull_aft arguments update
aGuyLearning Dec 18, 2024
742d38c
log_logistic update
aGuyLearning Dec 18, 2024
02e343d
updated log logistic example
aGuyLearning Dec 18, 2024
6038c7a
Merge branch 'main' into enhancement/issue-840
Zethson Dec 20, 2024
8e1baa5
store summary df in adata.uns
aGuyLearning Jan 8, 2025
119947b
Merge branch 'main' into enhancement/issue-840
aGuyLearning Jan 8, 2025
eb9daba
try moving np
eroell Jan 8, 2025
e340a28
omit inplace keyword
aGuyLearning Jan 8, 2025
c6a81df
added explanation, as to where the results are stored
aGuyLearning Jan 8, 2025
38f4efb
corrected spelling
aGuyLearning Jan 8, 2025
501b864
updated tests to check for .uns ( should be removed later, when the u…
aGuyLearning Jan 8, 2025
eb0b404
fix argument order, doc fixes
eroell Jan 8, 2025
cffed4d
slightly simpler wording
eroell Jan 8, 2025
3b21988
fiexed spelling
aGuyLearning Jan 9, 2025
58ce157
Update ehrapy/tools/_sa.py
eroell Jan 9, 2025
ee97f31
Update ehrapy/tools/_sa.py
eroell Jan 9, 2025
6dc7831
Update ehrapy/tools/_sa.py
eroell Jan 9, 2025
540b79f
Update ehrapy/tools/_sa.py
eroell Jan 9, 2025
09484d9
Update ehrapy/tools/_sa.py
eroell Jan 9, 2025
96db288
Update ehrapy/tools/_sa.py
eroell Jan 9, 2025
568b84b
Update ehrapy/tools/_sa.py
eroell Jan 9, 2025
cf00a3f
renamed function to be clearer
aGuyLearning Jan 10, 2025
b574978
Add uns_key parameter to Kaplan-Meier, Nelson-Aalen, and Weibull func…
aGuyLearning Jan 10, 2025
ace1baf
Update test assertions in TestSA for event_table handling and pass ad…
aGuyLearning Jan 10, 2025
3de5678
uns to in doc
eroell Jan 10, 2025
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