A tool for the spatial analysis of diversity

A pipeline for phylogenetic diversity analysis of GBIF-mediated data

PhyloNext documentation

Docker and Singularity images to run Biodiverse software

The package areaPD contains functions for calculating phylogenetic diversity (PD) for a set of geographic areas, calculating complementarity PD given a selected area, and drawing a Venn's diagram of PD within and between areas, given a phylogenetic tree and an assignment of samples (e.g., alleles, species, etc.) to areas.