PASSIONLab / BELLA Star 48 Code Issues Pull requests BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper matrix-multiplication long-read read-aligners spgemm genome-alignment overlapper pacbio-aligner longread-aligner Updated May 16, 2022 C++
PASSIONLab / ELBA Star 15 Code Issues Pull requests Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly genome hpc overlapping genome-assembly hpc-applications kmer-counting longread spgemm longread-aligner combblas Updated Jun 11, 2024 C++
feldroop / floxer Star 4 Code Issues Pull requests FM-index longread PEX-based aligner bioinformatics fmindex longread-aligner Updated Jan 13, 2025 C++
jianshu93 / minimap2-rs-test Star 0 Code Issues Pull requests Testing minimap2-rs for large-scale sequence alignment alignment longread-aligner seed-chain-extend Updated Nov 24, 2024 Rust