Advanced Multilanguage Interface to CVODES and IDAS

An F# library for mechanistic modelling of ecological time series data

CE-ABC is a code to simulate the epidemic outbreaks with mechanistic models through a cross-entropy approximate Bayesian framework.

This is the computer code corresponding to "Microbial physiology governs the oceanic distribution of dissolved organic carbon in a scenario of equal degradability"

This work aims to explore the differences between Python and Julia and to propose a detailed overview of the best-suited applications for each language. The repository includes mechanistic models in both Python and Julia.

Demonstrating the use of Prefect to orchestrate the creation of machine learning surrogate models as applied to mechanistic crop models.

A mechanistic model to simulate the spread of Ascochyta blight in a chickpea field

Simulate industrial fermentation processes and generate large data sets resembling real systems 🚀

My GitHub Page

Nitrogen balance model components and test procedures

Mechanistic individual mobility generation models with a synthetic dataset

eBCSgen - BioChemical Space Language support tool.

Mechanistic Bayesian Machine Learning model of eczema dynamic

Library with kinetic models to simulate microbial growth

Simulation model of the biomass of grassland plant species

Matlab code for the network model of DOC compounds and microbes, corresponding to the publication in Scientific Reports (2019): "Long-term stability of marine dissolved organic carbon emerges from a neutral network of compounds and microbes".

Ecosystem model developped by Ludiwine Clouzot and Peter A. Vanrolleghem

Mechanistic modelling of outbreak response interventions to human vaccine-preventable diseases: a systematic review of modelling practices before COVID-19

Master thesis project in 2022, at the @mackelab: In this project, simulation based inference is used to infer micro-parameters of the brain

Quarto source code for my master's thesis "Remote Sensing of Foliar Nitrogen in Californian Almonds" (2023)