MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.
DupFinder: A tools to detect the duplicated genes using Illumina and Nanopore sequencing data
population structural variant calling with smoove
A snakemake pipeline to call structure variants from ONT data
A combination of optical genome mapping with Bionano and whole genome sequencing short-read data. This pipeline was created to help integrate structural variant calling from these two technologies.
Scripts used to compare SVs detected from long read and long read assembly
Garvan KCCG Student Summer Research Project #1 Benchmarking structural variant callers on whole genome sequencing data
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