Generate IGV style locus tracks from bigWig files in R
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Oct 28, 2024 - R
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ucsc-browser
Here are 10 public repositories matching this topic...
An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
transcription-factors rna-seq data-visualization epigenetics chip-seq histone atac-seq r-package enhancer transcription-factor-binding ucsc-browser regulatory-network epigenomics multi-omics enhancer-prediction chromatin-accessibiity regulome-analysis
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Nov 18, 2023 - HTML
Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee
bash r ngs computational-biology data-visualization pca-analysis data-analysis university-course heatmaps biplot motif-discovery ucsc-browser computational-genomics volcano-plot
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Jan 25, 2019 - R
An install script for the UCSC Genome Browser
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Mar 11, 2020 - Shell
Process UCSC multiple alignment database, e.g. extract metadata, choose subset of species.
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Mar 11, 2020 - Python
This folder contains R scripts for differential expression analysis and analyses of tissue-specific expression, inter-species conservation, and genetic variations of the CAPN10 gene in a bioinformatics project on PCOS and insulin resistance.
dbsnp gtex clinvar differential-expression ncbi-geo limma ucsc-browser expression-atlas dbvar microarray-data-analysis human-protein-atlas pcos-database
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Jan 8, 2025 - R
An easy to use tool to generate heatmap like tracks for the UCSC Genome Browser
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Jun 24, 2021 - Python
Sequencing data preprocessing
mapping ngs sequencing entrez bigwig chip-seq peak-caller wiggle galaxy-project fastq bedtools ncbi samtools sra ucsc-browser bowtie2 chip-seq-pipelines galaxy-server macs2 bedfile
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Jun 18, 2018 - R
An introductory activity for epigenetics, or the idea of "nature versus nurture" in genetics. Learners use the UCSC Genome Browser.
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Jan 15, 2025 - CSS
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