Releases: umccr/v2-samplesheet-maker
Releases · umccr/v2-samplesheet-maker
v4.2.4.post20241110133537 release
v4.2.4.post20241110133537
Coverage Report
============================= test session starts ==============================
platform linux -- Python 3.11.10, pytest-8.3.3, pluggy-1.5.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
configfile: pyproject.toml
plugins: cov-6.0.0
collected 29 items
tests/v2_samplesheet_maker/classes/test_samplesheet.py ...
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py ..........
---------- coverage: platform linux, python 3.11.10-final-0 ----------
Name Stmts Miss Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/samplesheet.py 146 38 74%
src/v2_samplesheet_maker/classes/super_sections.py 130 27 79%
src/v2_samplesheet_maker/enums.py 15 0 100%
src/v2_samplesheet_maker/functions/__init__.py 0 0 100%
src/v2_samplesheet_maker/functions/run_info_reader.py 19 19 0%
src/v2_samplesheet_maker/functions/run_info_writer.py 56 56 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_reader.py 21 21 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_to_run_info.py 51 51 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_writer.py 27 27 0%
src/v2_samplesheet_maker/globals.py 2 0 100%
src/v2_samplesheet_maker/models/__init__.py 0 0 100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py 55 2 96%
src/v2_samplesheet_maker/models/cloud_section.py 35 10 71%
src/v2_samplesheet_maker/models/run_info_sections.py 35 2 94%
src/v2_samplesheet_maker/models/samplesheet.py 13 13 0%
src/v2_samplesheet_maker/models/tso500l_sections.py 42 6 86%
src/v2_samplesheet_maker/models/tso500s_sections.py 42 6 86%
src/v2_samplesheet_maker/run/__init__.py 0 0 100%
src/v2_samplesheet_maker/run/run_info_reader.py 12 12 0%
src/v2_samplesheet_maker/run/run_info_writer.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_reader.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_to_run_info_xml.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py 12 12 0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py 15 2 87%
src/v2_samplesheet_maker/section_classes/cloud_sections.py 34 11 68%
src/v2_samplesheet_maker/section_classes/run_info_sections.py 11 0 100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py 19 2 89%
src/v2_samplesheet_maker/section_classes/tso500s_sections.py 19 2 89%
src/v2_samplesheet_maker/utils/__init__.py 26 4 85%
src/v2_samplesheet_maker/utils/cli.py 123 71 42%
src/v2_samplesheet_maker/utils/docopt_docs.py 10 10 0%
src/v2_samplesheet_maker/utils/logger.py 36 8 78%
src/v2_samplesheet_maker/utils/xml.py 24 24 0%
--------------------------------------------------------------------------------------
TOTAL 1066 472 56%
============================== 29 passed in 0.99s ==============================
v4.2.4.post20241110085657 release
v4.2.4.post20241110085657
This tag was signed with the committer’s verified signature.
alexiswl
Alexis Lucattini
v4.2.4.post20241110085657
Coverage Report
============================= test session starts ==============================
platform linux -- Python 3.11.10, pytest-8.3.3, pluggy-1.5.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
configfile: pyproject.toml
plugins: cov-6.0.0
collected 29 items
tests/v2_samplesheet_maker/classes/test_samplesheet.py ...
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py ..........
---------- coverage: platform linux, python 3.11.10-final-0 ----------
Name Stmts Miss Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/samplesheet.py 144 37 74%
src/v2_samplesheet_maker/classes/super_sections.py 130 27 79%
src/v2_samplesheet_maker/enums.py 15 0 100%
src/v2_samplesheet_maker/functions/__init__.py 0 0 100%
src/v2_samplesheet_maker/functions/run_info_reader.py 19 19 0%
src/v2_samplesheet_maker/functions/run_info_writer.py 56 56 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_reader.py 21 21 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_to_run_info.py 51 51 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_writer.py 27 27 0%
src/v2_samplesheet_maker/globals.py 2 0 100%
src/v2_samplesheet_maker/models/__init__.py 0 0 100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py 55 2 96%
src/v2_samplesheet_maker/models/cloud_section.py 35 10 71%
src/v2_samplesheet_maker/models/run_info_sections.py 35 2 94%
src/v2_samplesheet_maker/models/samplesheet.py 13 13 0%
src/v2_samplesheet_maker/models/tso500l_sections.py 42 6 86%
src/v2_samplesheet_maker/models/tso500s_sections.py 42 6 86%
src/v2_samplesheet_maker/run/__init__.py 0 0 100%
src/v2_samplesheet_maker/run/run_info_reader.py 12 12 0%
src/v2_samplesheet_maker/run/run_info_writer.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_reader.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_to_run_info_xml.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py 12 12 0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py 15 2 87%
src/v2_samplesheet_maker/section_classes/cloud_sections.py 34 11 68%
src/v2_samplesheet_maker/section_classes/run_info_sections.py 11 0 100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py 19 2 89%
src/v2_samplesheet_maker/section_classes/tso500s_sections.py 19 2 89%
src/v2_samplesheet_maker/utils/__init__.py 26 4 85%
src/v2_samplesheet_maker/utils/cli.py 123 71 42%
src/v2_samplesheet_maker/utils/docopt_docs.py 10 10 0%
src/v2_samplesheet_maker/utils/logger.py 36 8 78%
src/v2_samplesheet_maker/utils/xml.py 24 24 0%
--------------------------------------------------------------------------------------
TOTAL 1064 471 56%
============================== 29 passed in 0.90s ==============================
v4.2.4.post20240528161300 release
v4.2.4.post20240528161300
Coverage Report
============================= test session starts ==============================
platform linux -- Python 3.11.9, pytest-8.2.1, pluggy-1.5.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
configfile: pyproject.toml
plugins: cov-5.0.0
collected 29 items
tests/v2_samplesheet_maker/classes/test_samplesheet.py ...
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py ..........
---------- coverage: platform linux, python 3.11.9-final-0 -----------
Name Stmts Miss Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/samplesheet.py 144 37 74%
src/v2_samplesheet_maker/classes/super_sections.py 130 27 79%
src/v2_samplesheet_maker/enums.py 15 0 100%
src/v2_samplesheet_maker/functions/__init__.py 0 0 100%
src/v2_samplesheet_maker/functions/run_info_reader.py 19 19 0%
src/v2_samplesheet_maker/functions/run_info_writer.py 56 56 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_reader.py 21 21 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_to_run_info.py 51 51 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_writer.py 27 27 0%
src/v2_samplesheet_maker/globals.py 2 0 100%
src/v2_samplesheet_maker/models/__init__.py 0 0 100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py 55 2 96%
src/v2_samplesheet_maker/models/cloud_section.py 35 10 71%
src/v2_samplesheet_maker/models/run_info_sections.py 35 2 94%
src/v2_samplesheet_maker/models/samplesheet.py 13 13 0%
src/v2_samplesheet_maker/models/tso500l_sections.py 42 6 86%
src/v2_samplesheet_maker/models/tso500s_sections.py 42 6 86%
src/v2_samplesheet_maker/run/__init__.py 0 0 100%
src/v2_samplesheet_maker/run/run_info_reader.py 12 12 0%
src/v2_samplesheet_maker/run/run_info_writer.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_reader.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_to_run_info_xml.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py 12 12 0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py 15 2 87%
src/v2_samplesheet_maker/section_classes/cloud_sections.py 34 11 68%
src/v2_samplesheet_maker/section_classes/run_info_sections.py 11 0 100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py 19 2 89%
src/v2_samplesheet_maker/section_classes/tso500s_sections.py 19 2 89%
src/v2_samplesheet_maker/utils/__init__.py 26 4 85%
src/v2_samplesheet_maker/utils/cli.py 123 71 42%
src/v2_samplesheet_maker/utils/docopt_docs.py 10 10 0%
src/v2_samplesheet_maker/utils/logger.py 36 8 78%
src/v2_samplesheet_maker/utils/xml.py 24 24 0%
--------------------------------------------------------------------------------------
TOTAL 1064 471 56%
============================== 29 passed in 0.94s ==============================
v4.2.4.post20240508150053 release
v4.2.4.post20240508150053
Coverage Report
============================= test session starts ==============================
platform linux -- Python 3.11.9, pytest-8.2.0, pluggy-1.5.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
configfile: pyproject.toml
plugins: cov-5.0.0
collected 29 items
tests/v2_samplesheet_maker/classes/test_samplesheet.py ...
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py ..........
---------- coverage: platform linux, python 3.11.9-final-0 -----------
Name Stmts Miss Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/samplesheet.py 145 37 74%
src/v2_samplesheet_maker/classes/super_sections.py 130 27 79%
src/v2_samplesheet_maker/enums.py 15 0 100%
src/v2_samplesheet_maker/functions/__init__.py 0 0 100%
src/v2_samplesheet_maker/functions/run_info_reader.py 20 20 0%
src/v2_samplesheet_maker/functions/run_info_writer.py 57 57 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_reader.py 22 22 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_to_run_info.py 52 52 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_writer.py 28 28 0%
src/v2_samplesheet_maker/globals.py 2 0 100%
src/v2_samplesheet_maker/models/__init__.py 0 0 100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py 56 2 96%
src/v2_samplesheet_maker/models/cloud_section.py 36 10 72%
src/v2_samplesheet_maker/models/run_info_sections.py 36 2 94%
src/v2_samplesheet_maker/models/samplesheet.py 13 13 0%
src/v2_samplesheet_maker/models/tso500l_sections.py 43 6 86%
src/v2_samplesheet_maker/models/tso500s_sections.py 43 6 86%
src/v2_samplesheet_maker/run/__init__.py 0 0 100%
src/v2_samplesheet_maker/run/run_info_reader.py 13 13 0%
src/v2_samplesheet_maker/run/run_info_writer.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_reader.py 13 13 0%
src/v2_samplesheet_maker/run/v2_samplesheet_to_run_info_xml.py 13 13 0%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py 12 12 0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py 16 2 88%
src/v2_samplesheet_maker/section_classes/cloud_sections.py 35 11 69%
src/v2_samplesheet_maker/section_classes/run_info_sections.py 12 0 100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py 20 2 90%
src/v2_samplesheet_maker/section_classes/tso500s_sections.py 20 2 90%
src/v2_samplesheet_maker/utils/__init__.py 26 4 85%
src/v2_samplesheet_maker/utils/cli.py 123 71 42%
src/v2_samplesheet_maker/utils/docopt_docs.py 10 10 0%
src/v2_samplesheet_maker/utils/logger.py 37 8 78%
src/v2_samplesheet_maker/utils/xml.py 25 25 0%
--------------------------------------------------------------------------------------
TOTAL 1085 480 56%
============================== 29 passed in 0.90s ==============================
v4.2.4.post20240305101119 release
v4.2.4.post20240305101119
Coverage Report
============================= test session starts ==============================
platform linux -- Python 3.11.8, pytest-8.0.2, pluggy-1.4.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
plugins: cov-4.1.0
collected 29 items
tests/v2_samplesheet_maker/classes/test_samplesheet.py ...
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py ..........
---------- coverage: platform linux, python 3.11.8-final-0 -----------
Name Stmts Miss Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/samplesheet.py 144 37 74%
src/v2_samplesheet_maker/classes/super_sections.py 130 27 79%
src/v2_samplesheet_maker/enums.py 15 0 100%
src/v2_samplesheet_maker/functions/__init__.py 0 0 100%
src/v2_samplesheet_maker/functions/run_info_reader.py 20 20 0%
src/v2_samplesheet_maker/functions/run_info_writer.py 57 57 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_reader.py 22 22 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_to_run_info.py 52 52 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_writer.py 28 28 0%
src/v2_samplesheet_maker/globals.py 0 0 100%
src/v2_samplesheet_maker/models/__init__.py 0 0 100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py 56 2 96%
src/v2_samplesheet_maker/models/cloud_section.py 36 10 72%
src/v2_samplesheet_maker/models/run_info_sections.py 36 2 94%
src/v2_samplesheet_maker/models/samplesheet.py 13 13 0%
src/v2_samplesheet_maker/models/tso500l_sections.py 43 6 86%
src/v2_samplesheet_maker/models/tso500s_sections.py 43 6 86%
src/v2_samplesheet_maker/run/__init__.py 0 0 100%
src/v2_samplesheet_maker/run/run_info_reader.py 13 13 0%
src/v2_samplesheet_maker/run/run_info_writer.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_reader.py 13 13 0%
src/v2_samplesheet_maker/run/v2_samplesheet_to_run_info_xml.py 13 13 0%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py 12 12 0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py 16 2 88%
src/v2_samplesheet_maker/section_classes/cloud_sections.py 35 11 69%
src/v2_samplesheet_maker/section_classes/run_info_sections.py 12 0 100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py 20 2 90%
src/v2_samplesheet_maker/section_classes/tso500s_sections.py 20 2 90%
src/v2_samplesheet_maker/utils/__init__.py 26 4 85%
src/v2_samplesheet_maker/utils/cli.py 123 71 42%
src/v2_samplesheet_maker/utils/docopt_docs.py 10 10 0%
src/v2_samplesheet_maker/utils/logger.py 37 8 78%
src/v2_samplesheet_maker/utils/xml.py 25 25 0%
--------------------------------------------------------------------------------------
TOTAL 1082 480 56%
============================== 29 passed in 0.95s ==============================
v4.2.4.post20240304150506 release
v4.2.4.post20240304150506
Coverage Report
============================= test session starts ==============================
platform linux -- Python 3.11.8, pytest-8.1.0, pluggy-1.4.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
configfile: pyproject.toml
plugins: cov-4.1.0
collected 29 items
tests/v2_samplesheet_maker/classes/test_samplesheet.py ...
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py ..........
---------- coverage: platform linux, python 3.11.8-final-0 -----------
Name Stmts Miss Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/samplesheet.py 141 37 74%
src/v2_samplesheet_maker/classes/super_sections.py 130 27 79%
src/v2_samplesheet_maker/enums.py 10 0 100%
src/v2_samplesheet_maker/functions/__init__.py 0 0 100%
src/v2_samplesheet_maker/functions/run_info_reader.py 20 20 0%
src/v2_samplesheet_maker/functions/run_info_writer.py 56 56 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_reader.py 22 22 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_writer.py 28 28 0%
src/v2_samplesheet_maker/globals.py 0 0 100%
src/v2_samplesheet_maker/models/__init__.py 0 0 100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py 56 2 96%
src/v2_samplesheet_maker/models/cloud_section.py 36 10 72%
src/v2_samplesheet_maker/models/run_info_sections.py 36 2 94%
src/v2_samplesheet_maker/models/samplesheet.py 13 13 0%
src/v2_samplesheet_maker/models/tso500l_sections.py 43 6 86%
src/v2_samplesheet_maker/run/__init__.py 0 0 100%
src/v2_samplesheet_maker/run/run_info_reader.py 13 13 0%
src/v2_samplesheet_maker/run/run_info_writer.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_reader.py 13 13 0%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py 12 12 0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py 16 2 88%
src/v2_samplesheet_maker/section_classes/cloud_sections.py 35 11 69%
src/v2_samplesheet_maker/section_classes/run_info_sections.py 12 0 100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py 20 2 90%
src/v2_samplesheet_maker/utils/__init__.py 26 4 85%
src/v2_samplesheet_maker/utils/cli.py 96 45 53%
src/v2_samplesheet_maker/utils/docopt_docs.py 8 8 0%
src/v2_samplesheet_maker/utils/logger.py 37 8 78%
src/v2_samplesheet_maker/utils/xml.py 25 25 0%
--------------------------------------------------------------------------------------
TOTAL 916 378 59%
============================== 29 passed in 0.98s ==============================
v4.2.4.dev20240305094958 release
v4.2.4.dev20240305094958
Coverage Report
============================= test session starts ==============================
platform linux -- Python 3.11.8, pytest-8.0.2, pluggy-1.4.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
plugins: cov-4.1.0
collected 29 items
tests/v2_samplesheet_maker/classes/test_samplesheet.py ...
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py ..........
---------- coverage: platform linux, python 3.11.8-final-0 -----------
Name Stmts Miss Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/samplesheet.py 144 37 74%
src/v2_samplesheet_maker/classes/super_sections.py 130 27 79%
src/v2_samplesheet_maker/enums.py 15 0 100%
src/v2_samplesheet_maker/functions/__init__.py 0 0 100%
src/v2_samplesheet_maker/functions/run_info_reader.py 20 20 0%
src/v2_samplesheet_maker/functions/run_info_writer.py 57 57 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_reader.py 22 22 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_to_run_info.py 52 52 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_writer.py 28 28 0%
src/v2_samplesheet_maker/globals.py 0 0 100%
src/v2_samplesheet_maker/models/__init__.py 0 0 100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py 56 2 96%
src/v2_samplesheet_maker/models/cloud_section.py 36 10 72%
src/v2_samplesheet_maker/models/run_info_sections.py 36 2 94%
src/v2_samplesheet_maker/models/samplesheet.py 13 13 0%
src/v2_samplesheet_maker/models/tso500l_sections.py 43 6 86%
src/v2_samplesheet_maker/models/tso500s_sections.py 43 6 86%
src/v2_samplesheet_maker/run/__init__.py 0 0 100%
src/v2_samplesheet_maker/run/run_info_reader.py 13 13 0%
src/v2_samplesheet_maker/run/run_info_writer.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_reader.py 13 13 0%
src/v2_samplesheet_maker/run/v2_samplesheet_to_run_info_xml.py 13 13 0%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py 12 12 0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py 16 2 88%
src/v2_samplesheet_maker/section_classes/cloud_sections.py 35 11 69%
src/v2_samplesheet_maker/section_classes/run_info_sections.py 12 0 100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py 20 2 90%
src/v2_samplesheet_maker/section_classes/tso500s_sections.py 20 2 90%
src/v2_samplesheet_maker/utils/__init__.py 26 4 85%
src/v2_samplesheet_maker/utils/cli.py 123 71 42%
src/v2_samplesheet_maker/utils/docopt_docs.py 10 10 0%
src/v2_samplesheet_maker/utils/logger.py 37 8 78%
src/v2_samplesheet_maker/utils/xml.py 25 25 0%
--------------------------------------------------------------------------------------
TOTAL 1082 480 56%
============================== 29 passed in 0.91s ==============================
v4.2.4.dev20240304143355 release
v4.2.4.dev20240304143355
Coverage Report
============================= test session starts ==============================
platform linux -- Python 3.11.8, pytest-8.1.0, pluggy-1.4.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
configfile: pyproject.toml
plugins: cov-4.1.0
collected 29 items
tests/v2_samplesheet_maker/classes/test_samplesheet.py ...
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py ..........
---------- coverage: platform linux, python 3.11.8-final-0 -----------
Name Stmts Miss Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/samplesheet.py 141 37 74%
src/v2_samplesheet_maker/classes/super_sections.py 130 27 79%
src/v2_samplesheet_maker/enums.py 10 0 100%
src/v2_samplesheet_maker/functions/__init__.py 0 0 100%
src/v2_samplesheet_maker/functions/run_info_reader.py 20 20 0%
src/v2_samplesheet_maker/functions/run_info_writer.py 56 56 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_reader.py 22 22 0%
src/v2_samplesheet_maker/functions/v2_samplesheet_writer.py 28 28 0%
src/v2_samplesheet_maker/globals.py 0 0 100%
src/v2_samplesheet_maker/models/__init__.py 0 0 100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py 56 2 96%
src/v2_samplesheet_maker/models/cloud_section.py 36 10 72%
src/v2_samplesheet_maker/models/run_info_sections.py 36 2 94%
src/v2_samplesheet_maker/models/samplesheet.py 13 13 0%
src/v2_samplesheet_maker/models/tso500l_sections.py 43 6 86%
src/v2_samplesheet_maker/run/__init__.py 0 0 100%
src/v2_samplesheet_maker/run/run_info_reader.py 13 13 0%
src/v2_samplesheet_maker/run/run_info_writer.py 12 12 0%
src/v2_samplesheet_maker/run/v2_samplesheet_reader.py 13 13 0%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py 12 12 0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py 16 2 88%
src/v2_samplesheet_maker/section_classes/cloud_sections.py 35 11 69%
src/v2_samplesheet_maker/section_classes/run_info_sections.py 12 0 100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py 20 2 90%
src/v2_samplesheet_maker/utils/__init__.py 26 4 85%
src/v2_samplesheet_maker/utils/cli.py 96 45 53%
src/v2_samplesheet_maker/utils/docopt_docs.py 8 8 0%
src/v2_samplesheet_maker/utils/logger.py 37 8 78%
src/v2_samplesheet_maker/utils/xml.py 25 25 0%
--------------------------------------------------------------------------------------
TOTAL 916 378 59%
============================== 29 passed in 0.88s ==============================
v4.2.4.post20240220125103 release
v4.2.4.post20240220125103
Coverage Report
============================= test session starts ==============================
platform linux -- Python 3.10.13, pytest-8.0.1, pluggy-1.4.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
plugins: cov-4.1.0
collected 29 items
tests/v2_samplesheet_maker/classes/test_samplesheet.py ...
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py ..........
=============================== warnings summary ===============================
src/v2_samplesheet_maker/classes/samplesheet.py:10
/home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker/src/v2_samplesheet_maker/classes/samplesheet.py:10: DeprecationWarning:
Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0),
(to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries)
but was not found to be installed on your system.
If this would cause problems for you,
please provide us feedback at https://github.com/pandas-dev/pandas/issues/54466
import pandas as pd
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
---------- coverage: platform linux, python 3.10.13-final-0 ----------
Name Stmts Miss Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/samplesheet.py 141 37 74%
src/v2_samplesheet_maker/classes/super_sections.py 130 27 79%
src/v2_samplesheet_maker/enums.py 10 0 100%
src/v2_samplesheet_maker/globals.py 0 0 100%
src/v2_samplesheet_maker/models/__init__.py 0 0 100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py 56 2 96%
src/v2_samplesheet_maker/models/cloud_section.py 36 10 72%
src/v2_samplesheet_maker/models/run_info_sections.py 36 2 94%
src/v2_samplesheet_maker/models/samplesheet.py 13 13 0%
src/v2_samplesheet_maker/models/tso500l_sections.py 43 6 86%
src/v2_samplesheet_maker/run/__init__.py 0 0 100%
src/v2_samplesheet_maker/run/v2_samplesheet_reader.py 16 16 0%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py 14 14 0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py 16 2 88%
src/v2_samplesheet_maker/section_classes/cloud_sections.py 30 6 80%
src/v2_samplesheet_maker/section_classes/run_info_sections.py 12 0 100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py 20 2 90%
src/v2_samplesheet_maker/utils/__init__.py 25 3 88%
src/v2_samplesheet_maker/utils/cli.py 52 3 94%
src/v2_samplesheet_maker/utils/docopt_docs.py 4 4 0%
src/v2_samplesheet_maker/utils/logger.py 37 8 78%
--------------------------------------------------------------------------------------
TOTAL 691 155 78%
======================== 29 passed, 1 warning in 0.89s =========================
v4.2.4.post20240205170611 release
v4.2.4.post20240205170611
Coverage Report
============================= test session starts ==============================
platform linux -- Python 3.10.13, pytest-8.0.0, pluggy-1.4.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
plugins: cov-4.1.0
collected 22 items
tests/v2_samplesheet_maker/classes/test_samplesheet.py .
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py .....
=============================== warnings summary ===============================
src/v2_samplesheet_maker/classes/super_sections.py:4
/home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker/src/v2_samplesheet_maker/classes/super_sections.py:4: DeprecationWarning:
Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0),
(to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries)
but was not found to be installed on your system.
If this would cause problems for you,
please provide us feedback at https://github.com/pandas-dev/pandas/issues/54466
import pandas as pd
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
---------- coverage: platform linux, python 3.10.13-final-0 ----------
Name Stmts Miss Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/__init__.py 0 0 100%
src/v2_samplesheet_maker/classes/samplesheet.py 75 20 73%
src/v2_samplesheet_maker/classes/super_sections.py 111 23 79%
src/v2_samplesheet_maker/enums.py 10 0 100%
src/v2_samplesheet_maker/globals.py 0 0 100%
src/v2_samplesheet_maker/models/__init__.py 0 0 100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py 52 2 96%
src/v2_samplesheet_maker/models/cloud_section.py 28 6 79%
src/v2_samplesheet_maker/models/run_info_sections.py 30 1 97%
src/v2_samplesheet_maker/models/samplesheet.py 13 13 0%
src/v2_samplesheet_maker/models/tso500l_sections.py 39 4 90%
src/v2_samplesheet_maker/run/__init__.py 0 0 100%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py 14 14 0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py 16 2 88%
src/v2_samplesheet_maker/section_classes/cloud_sections.py 29 13 55%
src/v2_samplesheet_maker/section_classes/run_info_sections.py 12 0 100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py 20 2 90%
src/v2_samplesheet_maker/utils/__init__.py 0 0 100%
src/v2_samplesheet_maker/utils/cli.py 33 3 91%
src/v2_samplesheet_maker/utils/docopt_docs.py 2 2 0%
src/v2_samplesheet_maker/utils/logger.py 37 8 78%
--------------------------------------------------------------------------------------
TOTAL 521 113 78%
======================== 22 passed, 1 warning in 0.80s =========================