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Update shiny.Rmd

Update shiny.Rmd #302

Triggered via push October 10, 2024 18:13
Status Failure
Total duration 54m 12s
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deploy.yml

on: push
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2 errors and 6 warnings
deploy
Branch "keller-mark/shinyapps-fix" is not allowed to deploy to github-pages due to environment protection rules.
deploy
The deployment was rejected or didn't satisfy other protection rules.
build
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
build
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
build
Vignettes missing from index: dev_wrapper_class, dev_wrapper_subclass, export_files, giotto, json_local, local_data_overview, ome_tiff_local, pkgdown, seurat_azimuth, seurat_basic, seuratdata, shiny, single_cell_experiment, spatial_experiment, web_only/json_remote, web_only/ome_tiff_remote
build
Package ‘knitr’ does not have a registered vignette engine