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fusemap_environment.yaml
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fusemap_environment.yaml
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name: fusemap_old
channels:
- pytorch
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- blas=1.0=mkl
- brotlipy=0.7.0=py37h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2022.07.19=h06a4308_0
- certifi=2022.9.24=py37h06a4308_0
- cffi=1.15.1=py37h74dc2b5_0
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- cryptography=37.0.1=py37h9ce1e76_0
- cudatoolkit=11.3.1=h2bc3f7f_2
- ffmpeg=4.3=hf484d3e_0
- freetype=2.11.0=h70c0345_0
- giflib=5.2.1=h7b6447c_0
- gmp=6.2.1=h295c915_3
- gnutls=3.6.15=he1e5248_0
- idna=3.3=pyhd3eb1b0_0
- intel-openmp=2021.4.0=h06a4308_3561
- jpeg=9e=h7f8727e_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libdeflate=1.8=h7f8727e_5
- libffi=3.3=he6710b0_2
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.2=h7f8727e_0
- libpng=1.6.37=hbc83047_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.16.0=h27cfd23_0
- libtiff=4.4.0=hecacb30_0
- libunistring=0.9.10=h27cfd23_0
- libwebp=1.2.4=h11a3e52_0
- libwebp-base=1.2.4=h5eee18b_0
- lz4-c=1.9.3=h295c915_1
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py37h7f8727e_0
- mkl_fft=1.3.1=py37hd3c417c_0
- mkl_random=1.2.2=py37h51133e4_0
- ncurses=6.3=h5eee18b_3
- nettle=3.7.3=hbbd107a_1
- numpy=1.21.5=py37h6c91a56_3
- numpy-base=1.21.5=py37ha15fc14_3
- openh264=2.1.1=h4ff587b_0
- openssl=1.1.1q=h7f8727e_0
- pillow=9.2.0=py37hace64e9_1
- pip=22.2.2=py37h06a4308_0
- pycparser=2.21=pyhd3eb1b0_0
- pyopenssl=22.0.0=pyhd3eb1b0_0
- pysocks=1.7.1=py37_1
- python=3.7.13=h12debd9_0
- pytorch=1.12.1=py3.7_cuda11.3_cudnn8.3.2_0
- pytorch-mutex=1.0=cuda
- readline=8.1.2=h7f8727e_1
- requests=2.28.1=py37h06a4308_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.39.3=h5082296_0
- tk=8.6.12=h1ccaba5_0
- torchaudio=0.12.1=py37_cu113
- torchvision=0.13.1=py37_cu113
- urllib3=1.26.11=py37h06a4308_0
- wheel=0.37.1=pyhd3eb1b0_0
- xz=5.2.6=h5eee18b_0
- zlib=1.2.12=h5eee18b_3
- zstd=1.5.2=ha4553b6_0
- pip:
- absl-py==1.3.0
- alabaster==0.7.13
- albumentations==1.3.0
- anndata==0.8.0
- annotated-types==0.5.0
- anyio==3.6.1
- appdirs==1.4.4
- argon2-cffi==21.3.0
- argon2-cffi-bindings==21.2.0
- attrs==22.1.0
- autopep8==2.0.2
- axial-positional-embedding==0.2.1
- babel==2.12.1
- backcall==0.2.0
- backports-zoneinfo==0.2.1
- beautifulsoup4==4.11.1
- bleach==5.0.1
- bokeh==2.4.3
- cachetools==5.2.0
- cftime==1.6.2
- click==8.1.3
- cloudpickle==2.2.0
- colorcet==3.0.1
- cycler==0.11.0
- dask==2022.2.0
- datashader==0.14.4
- datashape==0.5.2
- debugpy==1.6.3
- decorator==5.1.1
- defusedxml==0.7.1
- dgl==1.1.1+cu113
- dgl-cu110==0.6.1
- dglgo==0.0.2
- docutils==0.19
- einops==0.6.0
- entrypoints==0.4
- fastjsonschema==2.16.2
- fonttools==4.37.4
- fsspec==2023.1.0
- google-auth==2.15.0
- google-auth-oauthlib==0.4.6
- grpcio==1.51.1
- h5py==3.7.0
- harmonypy==0.0.9
- holoviews==1.15.4
- igraph==0.10.4
- imageio==2.25.0
- imagesize==1.4.1
- importlib-metadata==5.0.0
- importlib-resources==5.10.0
- ipykernel==6.16.0
- ipython==7.34.0
- ipython-genutils==0.2.0
- isort==5.11.5
- jedi==0.18.1
- jinja2==3.1.2
- joblib==1.2.0
- jsonschema==4.16.0
- jupyter-client==7.4.2
- jupyter-core==4.11.1
- jupyter-server==1.21.0
- jupyterlab-pygments==0.2.2
- kaleido==0.2.1
- kiwisolver==1.4.4
- leidenalg==0.9.1
- littleutils==0.2.2
- llvmlite==0.39.1
- local-attention==1.8.5
- locket==1.0.0
- markdown==3.4.1
- markupsafe==2.1.1
- matplotlib==3.5.3
- matplotlib-inline==0.1.6
- mistune==2.0.4
- mne==1.2.0
- mne-connectivity==0.4.0
- multipledispatch==0.6.0
- munkres==1.1.4
- muse-sc==0.0.8
- natsort==8.2.0
- nbclassic==0.4.5
- nbclient==0.7.0
- nbconvert==7.2.1
- nbformat==5.7.0
- nest-asyncio==1.5.6
- netcdf4==1.6.1
- networkx==2.6.3
- notebook==6.5.1
- notebook-shim==0.1.0
- numba==0.56.2
- numpydoc==1.5.0
- oauthlib==3.2.2
- ogb==1.3.6
- opencv-python==4.6.0.66
- opencv-python-headless==4.7.0.68
- outdated==0.2.2
- packaging==21.3
- pandas==1.3.5
- pandocfilters==1.5.0
- panel==0.14.3
- param==1.12.3
- parso==0.8.3
- partd==1.3.0
- patsy==0.5.3
- performer-pytorch==1.1.4
- pexpect==4.8.0
- pickle5==0.0.12
- pickleshare==0.7.5
- pkgutil-resolve-name==1.3.10
- plotly==5.11.0
- pooch==1.6.0
- prometheus-client==0.15.0
- prompt-toolkit==3.0.31
- protobuf==3.20.1
- psutil==5.9.2
- ptyprocess==0.7.0
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pycodestyle==2.10.0
- pyct==0.5.0
- pydantic==2.0.2
- pydantic-core==2.1.2
- pygments==2.13.0
- pynndescent==0.5.7
- pyparsing==3.0.9
- pyqt5==5.15.9
- pyqt5-plugins==5.15.9.2.3
- pyqt5-qt5==5.15.2
- pyqt5-sip==12.11.1
- pyqt5-tools==5.15.9.3.3
- pyrsistent==0.18.1
- python-dateutil==2.8.2
- python-dotenv==0.21.1
- pytz==2022.4
- pytz-deprecation-shim==0.1.0.post0
- pyviz-comms==2.2.1
- pywavelets==1.3.0
- pyyaml==6.0
- pyzmq==24.0.1
- qt5-applications==5.15.2.2.3
- qt5-tools==5.15.2.1.3
- qtpy==2.3.0
- qudida==0.0.4
- rdkit-pypi==2022.9.5
- requests-oauthlib==1.3.1
- rpy2==3.5.11
- rsa==4.9
- ruamel-yaml==0.17.32
- ruamel-yaml-clib==0.2.7
- scanpy==1.9.1
- scikit-image==0.19.3
- scikit-learn==1.0.2
- scipy==1.7.3
- seaborn==0.11.2
- send2trash==1.8.0
- session-info==1.0.0
- setuptools==59.8.0
- shap==0.41.0
- shapely==2.0.1
- sklearn==0.0
- slicer==0.0.7
- sniffio==1.3.0
- snowballstemmer==2.2.0
- soupsieve==2.3.2.post1
- sphinx==5.3.0
- sphinxcontrib-applehelp==1.0.2
- sphinxcontrib-devhelp==1.0.2
- sphinxcontrib-htmlhelp==2.0.0
- sphinxcontrib-jsmath==1.0.1
- sphinxcontrib-qthelp==1.0.3
- sphinxcontrib-serializinghtml==1.1.5
- statannotations==0.5.0
- statsmodels==0.13.2
- stdlib-list==0.8.0
- tabulate==0.9.0
- tenacity==8.1.0
- tensorboard==2.11.0
- tensorboard-data-server==0.6.1
- tensorboard-plugin-wit==1.8.1
- tensorboardx==2.5.1
- terminado==0.16.0
- texttable==1.6.7
- threadpoolctl==3.1.0
- tifffile==2021.11.2
- tinycss2==1.1.1
- tomli==2.0.1
- toolz==0.12.0
- tornado==6.2
- tqdm==4.64.1
- traitlets==5.4.0
- typer==0.9.0
- typing-extensions==4.7.1
- tzdata==2023.3
- tzlocal==4.3
- umap-learn==0.5.3
- wcwidth==0.2.5
- webencodings==0.5.1
- websocket-client==1.4.1
- werkzeug==2.2.2
- xarray==0.20.2
- zipp==3.9.0
prefix: /home/jialiulab/.conda/envs/fusemap