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1. LCR-BCCRC/lcr-modules LCR-BCCRC/lcr-modules Public

   Collection of standard analytical pipelines for genomic and transcriptomic data

   Python 17 7

2. uclahs-cds/package-CancerEvolutionVisualization uclahs-cds/package-CancerEvolutionVisualization Public

   Publication Quality Phylogenetic Tree Plots

   R 2

3. uclahs-cds/package-bedr uclahs-cds/package-bedr Public

   Genomic Region Processing using Tools Such as `BEDTools`, `BEDOPS` and `Tabix`

   R 1

4. uclahs-cds/tool-NFTest uclahs-cds/tool-NFTest Public

   CLI to automate Nextflow pipeline testing

   Python 12 1

5. uclahs-cds/metapipeline-DNA uclahs-cds/metapipeline-DNA Public

   Nextflow pipeline to convert BAM to FASTQ, align, perform QC, assess targeted coverage, call gSNP, call sSNV, call mtSNV, call SVs, call sCNA, and perform subclonal reconstruction

   Groovy 6