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1. fogg-lab/tissue-model-analysis-tools fogg-lab/tissue-model-analysis-tools Public

   An application for automated high-throughput analysis of cancer and endothelial cell dynamics in hydrogels.

   Python 1

2. fogg-lab/interactive-segmentation fogg-lab/interactive-segmentation Public

   Python 1 1

3. fogg-lab/characterizing-ecm-transcriptome-of-endometriosis fogg-lab/characterizing-ecm-transcriptome-of-endometriosis Public

   Python 1

4. fogg-lab/gene-platform fogg-lab/gene-platform Public

   JavaScript 1

5. gsea-rs gsea-rs Public

   WebAssembly-ready Rust implementation of preranked Gene Set Enrichment Analysis (GSEA) distilled from GSEApy (https://github.com/zqfang/GSEApy).

   Rust 1 1

6. Variance stabilizing transformation ... Variance stabilizing transformation (VST) for RNA-seq data like DESeq2's `vst` function with blind=TRUE.

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   """

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   Variance stabilizing transformation (VST) for RNA-seq data like DESeq2's vst function

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   with blind=TRUE.

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   Adapted from the pydeseq2 package: https://github.com/owkin/PyDESeq2