Merge pull request #100 from AllenNeuralDynamics/release-v0.14.0

Release v0.14.0

.github/workflows/publish_main.yml

@@ -0,0 +1,94 @@
+name: Tag and publish main
+on:
+  push:
+    branches:
+      - main
+
+jobs:
+  tag_and_publish:
+    name: Parse version
+    runs-on: ubuntu-latest
+    outputs:
+      pkg_version: ${{ steps.output_version.outputs.pkg_version }}
+    steps:
+    - uses: actions/checkout@v3
+    - name: Get version from file
+      run: |
+        pkg_name=$(grep -P 'version = \{attr = .*\}' pyproject.toml | grep -oP '\w+.__version__')
+        init_file="./src/${pkg_name//.__version__}/__init__.py"
+        pkg_version=$(grep -Po '[0-9]+\.[0-9]+\.[0-9]+' "$init_file")
+        echo "tag=$pkg_version" >> "$GITHUB_ENV"
+    - name: Create git tag
+      run: |
+        git tag "v${{ env.tag }}"
+    - name: Push git tag
+      run: git push origin "v${{ env.tag }}"
+    - name: Set up Python 3.10
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.10'
+    - name: Install dependencies
+      run: |
+        pip install --upgrade setuptools wheel twine build
+        python -m build
+        twine check dist/*
+    - name: Publish on PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1
+      with:
+        password: ${{ secrets.AIND_PYPI_TOKEN }}
+  publish_container:
+    runs-on: ubuntu-latest
+    env:
+      GO_VERSION: '1.14.12'
+      GO_OS: 'linux'
+      GO_ARCH: 'amd64'
+      SINGULARITY_VERSION: '3.7.0'
+    steps:
+      - uses: actions/checkout@v3
+      - name: Get version from file
+        run: |
+          pkg_name=$(grep -P 'version = \{attr = .*\}' pyproject.toml | grep -oP '\w+.__version__')
+          init_file="./src/${pkg_name//.__version__}/__init__.py"
+          pkg_version=$(grep -Po '[0-9]+\.[0-9]+\.[0-9]+' "$init_file")
+          echo "tag=$pkg_version" >> "$GITHUB_ENV"
+      - name: Install dependencies
+        run: |
+          sudo apt-get update && sudo apt-get install -y \
+          build-essential \
+          libssl-dev \
+          uuid-dev \
+          libgpgme11-dev \
+          squashfs-tools \
+          libseccomp-dev \
+          wget \
+          pkg-config \
+          procps
+      - name: Install GO
+        run: |
+          wget https://dl.google.com/go/go$GO_VERSION.$GO_OS-$GO_ARCH.tar.gz
+          sudo tar -C /usr/local -xzvf go$GO_VERSION.$GO_OS-$GO_ARCH.tar.gz
+          sudo rm go$GO_VERSION.$GO_OS-$GO_ARCH.tar.gz
+          echo 'export PATH=$PATH:/usr/local/go/bin' | sudo tee -a /etc/profile
+      - name: Install Singularity
+        run: |
+          cd ..
+          wget https://github.com/hpcng/singularity/releases/download/v${SINGULARITY_VERSION}/singularity-${SINGULARITY_VERSION}.tar.gz
+          sudo tar -xzf singularity-${SINGULARITY_VERSION}.tar.gz
+          sudo rm singularity-${SINGULARITY_VERSION}.tar.gz
+          echo "Finished installing binaries"
+          export PATH=$PATH:/usr/local/go/bin
+          cd singularity
+          sudo ./mconfig --without-suid
+          sudo make -C ./builddir
+          sudo make -C ./builddir install
+      - name: Build sif container
+        run: |
+          ls /
+          ls
+          mkdir build
+          sudo singularity build build/container.sif scripts/singularity_build.def
+      - name: Login and Deploy Container
+        run: |
+          echo ${{ secrets.GITHUB_TOKEN }} | singularity remote login -u ${{ github.actor }} --password-stdin oras://ghcr.io
+          singularity push build/container.sif oras://ghcr.io/${GITHUB_REPOSITORY}:${{ env.tag }}
+          singularity push build/container.sif oras://ghcr.io/${GITHUB_REPOSITORY}:latest

.github/workflows/test_and_lint.yml → .github/workflows/run_dev_tests.yml

@@ -1,9 +1,9 @@
-name: Lint and run tests
+name: Run checks in dev
 
 on:
   pull_request:
     branches:
-      - main
+      - dev
 
 jobs:
   ci:

.github/workflows/run_main_tests.yml

@@ -0,0 +1,43 @@
+name: Run checks in main and release
+
+on:
+  pull_request:
+    branches:
+      - '*release*'
+      - main
+
+jobs:
+  ci:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [ '3.10', '3.11' ]
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: | 
+        python -m pip install -e .[dev]
+    - name: Run linter checks
+      run: flake8 . && interrogate --verbose .
+    - name: Run tests and coverage
+      run: coverage run -m unittest discover && coverage report
+  verify_version:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - name: Check version incremented
+        run: |
+          pkg_name=$(grep -P 'version = \{attr = .*\}' pyproject.toml | grep -oP '\w+.__version__')
+          init_file="./src/${pkg_name//.__version__}/__init__.py"
+          pkg_version=$(grep -Po '[0-9]+\.[0-9]+\.[0-9]+' "$init_file")
+          latest_tag=$(git ls-remote --tags --refs --sort="v:refname" | tail -n1 | sed 's/.*\///')
+          echo "Checking pkg_version v$pkg_version and latest_tag $latest_tag"
+          if [ "$latest_tag" == "v$pkg_version" ]
+          then
+            exit 1
+          fi
+          echo "Versions are different"

src/aind_metadata_mapper/__init__.py

@@ -1,3 +1,3 @@
 """Init package"""
 
-__version__ = "0.13.2"
+__version__ = "0.14.0"