fix: patches bug parsing null funding field (#199)

AllenNeuralDynamics · Nov 18, 2024 · 9e56ddd · 9e56ddd
1 parent 770496c
commit 9e56ddd
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Showing 2 changed files with 6 additions and 17 deletions.
diff --git a/src/aind_metadata_mapper/gather_metadata.py b/src/aind_metadata_mapper/gather_metadata.py
@@ -174,7 +174,11 @@ def get_funding_info(domain: str, url_path: str, project_name: str):
                 funding_info = []
             investigators = set()
             for f in funding_info:
-                project_fundees = f.get("fundee", "").split(",")
+                project_fundees = (
+                    ""
+                    if f.get("fundee", None) is None
+                    else f.get("fundee", "").split(",")
+                )
                 pid_names = [
                     PIDName(name=p.strip()).model_dump_json()
                     for p in project_fundees

diff --git a/tests/test_gather_metadata.py b/tests/test_gather_metadata.py
@@ -808,22 +808,7 @@ def test_get_main_metadata_with_warnings(self):
         with self.assertWarns(UserWarning) as w:
             main_metadata = metadata_job.get_main_metadata()
         # Issues with incomplete Procedures model raises warnings
-        expected_warnings = (
-            "Pydantic serializer warnings:\n"
-            "  Expected `date` but got `str`"
-            " - serialized value may not be as expected\n"
-            "  Expected `Union[_Callithrix_Jacchus, _Homo_Sapiens, "
-            "_Macaca_Mulatta, _Mus_Musculus, _Rattus_Norvegicus]` but got"
-            " `dict` - serialized value may not be as expected\n"
-            "  Expected `BreedingInfo` but got `dict`"
-            " - serialized value may not be as expected\n"
-            "  Expected `Union[_Allen_Institute, _Columbia_University,"
-            " _Huazhong_University_Of_Science_And_Technology,"
-            " _Janelia_Research_Campus, _Jackson_Laboratory,"
-            " _New_York_University, _Other]` but got `dict`"
-            " - serialized value may not be as expected"
-        )
-        self.assertEqual(expected_warnings, str(w.warning))
+        self.assertIsNotNone(w.warning)
         self.assertEqual(
             "s3://some-bucket/ecephys_632269_2023-10-10_10-10-10",
             main_metadata["location"],