fix: adds lower bounds on packages in pyproject.toml (#125)

AllenNeuralDynamics · Aug 26, 2024 · ff159d2 · ff159d2
1 parent 0f0b355
commit ff159d2
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Showing 2 changed files with 10 additions and 9 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -44,7 +44,7 @@ all = [
 
 bergamo = [
     "scanimage-tiff-reader==1.4.1.4",
-    "numpy",
+    "numpy >= 1.26.4",
 ]
 
 bruker = [
@@ -53,21 +53,21 @@ bruker = [
 
 mesoscope = [
     "aind-metadata-mapper[bergamo]",
-    "pillow",
+    "pillow >= 10.4.0",
     "tifffile==2024.2.12 ; python_version >= '3.9'",
 ]
 
 openephys = [
-    "h5py",
-    "np_session",
-    "npc_ephys ; python_version >= '3.9'",
-    "scipy",
-    "pandas",
-    "numpy",
+    "h5py >= 3.11.0",
+    "np_session >= 0.1.39",
+    "npc_ephys >= 0.1.18 ; python_version >= '3.9'",
+    "scipy >= 1.11.0",
+    "pandas >= 2.2.2",
+    "numpy >= 1.26.4",
 ]
 
 dynamicrouting = [
-    "pyyaml>=6.0.0",
+    "pyyaml >= 6.0.0",
 ]
 
 [tool.setuptools.packages.find]

diff --git a/scripts/singularity_build.def b/scripts/singularity_build.def
@@ -8,5 +8,6 @@ Stage: build
 
 %post
     cd ${SINGULARITY_ROOTFS}/aind-metadata-mapper
+    pip install --upgrade pip
     pip install .[all] --no-cache-dir
     rm -rf ${SINGULARITY_ROOTFS}/aind-metadata-mapper