docs: mention that a log file with a fixed file name is always appended to #5
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This one tripped me up, as we are using our workflow management system (snakemake) to do the logging for us, but I also got these unexpected log files in the results directory. Also, I initially got confused by old error output before I realized that the log file is not cleared before writing new stuff. So it accumulates the logging output of multiple runs with the same data. As a minimal fix, this PR includes this info in the docs.