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docs: mention that a log file with a fixed file name is always appended to #5

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Sep 9, 2022
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docs: mention that a log file with a fixed file name is always appended to #5

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3acd45c
docs: mention that a log file with a fixed file name is always created
dlaehnemann Sep 7, 2022
0795a87
include info that all logging is always appended
dlaehnemann Sep 7, 2022
9f416fa
adjust wording to reflect the correct file naming
dlaehnemann Sep 7, 2022
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4 changes: 4 additions & 0 deletions docs/source/03_02_output_data.md
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Expand Up @@ -109,6 +109,10 @@ The following table describes each of the annotations in the output:
| Hex_alignment_score_MHCI | the alignment score by HEX for ` Best_affinity_MHCI_epitope ` | HEX |
| Hex_alignment_score_MHCII | the alignment score by HEX for ` Best_affinity_MHCII_epitope` | HEX |

In addition, all logging output is appended to a log file with the suffix
"*<folder>/<prefix>.log*", where the folder is set by `--output-folder` and the
prefix can be set with `--output-prefix`.

### Tabular format

An output table with the suffix "*_neoantigen_candidates_annotated.tsv*" is created.
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