Merge pull request easybuilders#21433 from ankekreuzer/core-packages-…

…JSC-part9

{vis, data, tools, lib}[GCCcore/13.3.0] at-spi2-atk-2.38.0, at-spi2-core-2.54.0, exiv2-0.28.3, GraphicsMagick-1.3.45, HDF-4.3.0, IPython-8.27.0, inih-58, libgeotiff-1.7.3

easybuild/easyconfigs/a/at-spi2-atk/at-spi2-atk-2.38.0-GCCcore-13.3.0.eb

@@ -0,0 +1,37 @@
+easyblock = 'MesonNinja'
+
+name = 'at-spi2-atk'
+version = '2.38.0'
+
+homepage = 'https://wiki.gnome.org/Accessibility'
+description = "AT-SPI 2 toolkit bridge"
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+source_urls = [FTPGNOME_SOURCE]
+sources = [SOURCELOWER_TAR_XZ]
+checksums = ['cfa008a5af822b36ae6287f18182c40c91dd699c55faa38605881ed175ca464f']
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('Meson', '1.4.0'),
+    ('Ninja', '1.12.1'),
+    ('pkgconf', '2.2.0'),
+]
+
+dependencies = [
+    ('GLib', '2.80.4'),
+    ('DBus', '1.15.8'),
+    ('at-spi2-core', '2.54.0'),
+    ('libxml2', '2.12.7'),
+    ('ATK', '2.38.0'),
+]
+
+configopts = "--libdir lib "
+
+sanity_check_paths = {
+    'files': ['lib/libatk-bridge-2.0.%s' % SHLIB_EXT],
+    'dirs': [],
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/a/at-spi2-core/at-spi2-core-2.54.0-GCCcore-13.3.0.eb

@@ -0,0 +1,40 @@
+easyblock = 'MesonNinja'
+
+name = 'at-spi2-core'
+version = '2.54.0'
+
+homepage = 'https://wiki.gnome.org/Accessibility'
+description = """
+ Assistive Technology Service Provider Interface.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+source_urls = [FTPGNOME_SOURCE]
+sources = [SOURCELOWER_TAR_XZ]
+checksums = ['d7eee7e75beddcc272cedc2b60535600f3aae6e481589ebc667afc437c0a6079']
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('Meson', '1.4.0'),
+    ('Ninja', '1.12.1'),
+    ('GObject-Introspection', '1.80.1'),
+    ('gettext', '0.22.5'),
+    ('pkgconf', '2.2.0'),
+]
+
+dependencies = [
+    ('GLib', '2.80.4'),
+    ('DBus', '1.15.8'),
+    ('X11', '20240607'),
+]
+
+# Hard disable Dbus broker detection and (potential) use of systemd
+configopts = "--libdir lib -Duse_systemd=false -Ddefault_bus=dbus-daemon"
+
+sanity_check_paths = {
+    'files': ['lib/libatspi.%s' % SHLIB_EXT],
+    'dirs': [],
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/e/exiv2/exiv2-0.28.3-GCCcore-13.3.0.eb

@@ -0,0 +1,38 @@
+easyblock = 'CMakeMake'
+
+name = 'exiv2'
+version = '0.28.3'
+
+homepage = 'http://www.exiv2.org'
+description = """
+ Exiv2 is a C++ library and a command line utility to manage image metadata. It provides fast and easy read and write
+ access to the Exif, IPTC and XMP metadata of digital images in various formats. Exiv2 is available as free software and
+ with a commercial license, and is used in many projects.
+"""
+
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+source_urls = ['https://github.com/Exiv2/exiv2/archive/refs/tags/']
+sources = ['v%(version)s.tar.gz']
+checksums = ['1315e17d454bf4da3cc0edb857b1d2c143670f3485b537d0f946d9ed31d87b70']
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('CMake', '3.29.3'),
+]
+
+dependencies = [
+    ('expat', '2.6.2'),
+    ('Brotli', '1.1.0'),
+    ('inih', '58'),
+]
+
+sanity_check_paths = {
+    'files': ['bin/exiv2', 'lib/libexiv2.%s' % SHLIB_EXT],
+    'dirs': []
+}
+
+sanity_check_commands = ["exiv2 --help"]
+
+moduleclass = 'vis'

easybuild/easyconfigs/g/GraphicsMagick/GraphicsMagick-1.3.45-GCCcore-13.3.0.eb

@@ -0,0 +1,51 @@
+easyblock = 'ConfigureMake'
+
+name = 'GraphicsMagick'
+version = '1.3.45'
+
+homepage = 'http://www.graphicsmagick.org/'
+description = """GraphicsMagick is the swiss army knife of image processing."""
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = [
+    SOURCEFORGE_SOURCE,
+    'ftp://ftp.graphicsmagick.org/pub/GraphicsMagick/%(version_major_minor)s/',
+]
+sources = [SOURCE_TAR_XZ]
+patches = [
+    'GraphicsMagick_pkgconfig_libtiff.patch'
+]
+checksums = [
+    {'GraphicsMagick-1.3.45.tar.xz': 'dcea5167414f7c805557de2d7a47a9b3147bcbf617b91f5f0f4afe5e6543026b'},
+    {'GraphicsMagick_pkgconfig_libtiff.patch': '25b4c5361f30e23c809a078ac4b26e670d2b8341496323480037e2095d969294'},
+]
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('Autotools', '20231222'),
+]
+
+dependencies = [
+    ('X11', '20240607'),
+    ('bzip2', '1.0.8'),
+    ('freetype', '2.13.2'),
+    ('libpng', '1.6.43'),
+    ('libjpeg-turbo', '3.0.1'),
+    ('LibTIFF', '4.6.0'),
+    ('libxml2', '2.12.7'),
+    ('XZ', '5.4.5'),
+    ('zlib', '1.3.1'),
+    ('Ghostscript', '10.03.1'),
+]
+
+modextrapaths = {'CPATH': ['include/GraphicsMagick']}
+
+sanity_check_paths = {
+    'files': ['bin/gm', 'lib/libGraphicsMagick.a', 'lib/libGraphicsMagick++.a',
+              'lib/libGraphicsMagickWand.a'],
+    'dirs': ['include/GraphicsMagick', 'lib/pkgconfig'],
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/h/HDF/HDF-4.3.0-GCCcore-13.3.0.eb

@@ -0,0 +1,58 @@
+easyblock = 'ConfigureMake'
+
+name = 'HDF'
+version = '4.3.0'
+
+homepage = 'https://support.hdfgroup.org/products/hdf4/'
+description = """
+ HDF (also known as HDF4) is a library and multi-object file format for
+ storing and managing data between machines.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/HDFGroup/hdf4/archive/refs/tags/']
+sources = ['%(namelower)s%(version)s.tar.gz']
+checksums = ['a6639a556650e6ea8632a17b8188a69de844bdff54ce121a1fd5b92c8dd06cb1']
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('Bison', '3.8.2'),
+    ('flex', '2.6.4'),
+]
+
+dependencies = [
+    ('libjpeg-turbo', '3.0.1'),
+    ('Szip', '2.1.1'),
+    ('zlib', '1.3.1'),
+    ('libtirpc', '1.3.5'),
+]
+
+preconfigopts = "LIBS='-ltirpc' "
+
+local_common_configopts = '--with-szlib=$EBROOTSZIP CFLAGS="$CFLAGS -I$EBROOTLIBTIRPC/include/tirpc" '
+local_common_configopts += '--includedir=%(installdir)s/include/%(namelower)s '
+
+configopts = [
+    local_common_configopts,
+    # Cannot build shared libraries and Fortran...
+    # https://trac.osgeo.org/gdal/wiki/HDF#IncompatibilitywithNetCDFLibraries
+    # netcdf must be disabled to allow HDF to be used by GDAL
+    local_common_configopts + "--enable-shared --disable-fortran --disable-netcdf",
+]
+
+
+sanity_check_paths = {
+    'files': ['bin/h4cc', 'bin/ncdump', 'lib/libdf.a', 'lib/libhdf4.settings', 'lib/libmfhdf.a', 'lib/libmfhdf.so'],
+    'dirs': ['include/%(namelower)s'],
+}
+
+sanity_check_commands = [
+    "h4cc --help",
+    "ncdump -V",
+]
+
+modextrapaths = {'CPATH': 'include/%(namelower)s'}
+
+moduleclass = 'data'

easybuild/easyconfigs/i/IPython/IPython-8.27.0-GCCcore-13.3.0.eb

@@ -0,0 +1,80 @@
+easyblock = 'PythonBundle'
+
+name = 'IPython'
+version = '8.27.0'
+
+homepage = 'https://ipython.org/index.html'
+description = """IPython provides a rich architecture for interactive computing with:
+ Powerful interactive shells (terminal and Qt-based).
+ A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media.
+ Support for interactive data visualization and use of GUI toolkits.
+ Flexible, embeddable interpreters to load into your own projects.
+ Easy to use, high performance tools for parallel computing."""
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('hatchling', '1.24.2'),
+]
+
+dependencies = [
+    ('Python', '3.12.3'),
+    ('Python-bundle-PyPI', '2024.06'),
+    ('ZeroMQ', '4.3.5'),
+    ('lxml', '5.3.0'),
+    ('jedi', '0.19.1')
+]
+
+sanity_pip_check = True
+use_pip = True
+
+# for the matplotlib-inline required extention we avoid the import sanity check
+# as it will fail without matplotlib in the environment, but ipython devs prefer not to make
+# matplotlib a required dep (https://github.com/ipython/matplotlib-inline/issues/4)
+# we follow the same convention and we not set matplotlib as dependency
+
+# Last updated 20240917
+exts_list = [
+    ('traitlets', '5.14.3', {
+        'checksums': ['9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7'],
+    }),
+    ('pure_eval', '0.2.3', {
+        'checksums': ['5f4e983f40564c576c7c8635ae88db5956bb2229d7e9237d03b3c0b0190eaf42'],
+    }),
+    ('executing', '2.1.0', {
+        'checksums': ['8ea27ddd260da8150fa5a708269c4a10e76161e2496ec3e587da9e3c0fe4b9ab'],
+    }),
+    ('asttokens', '2.4.1', {
+        'checksums': ['b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0'],
+    }),
+    ('stack_data', '0.6.3', {
+        'checksums': ['836a778de4fec4dcd1dcd89ed8abff8a221f58308462e1c4aa2a3cf30148f0b9'],
+    }),
+    ('prompt_toolkit', '3.0.47', {
+        'checksums': ['1e1b29cb58080b1e69f207c893a1a7bf16d127a5c30c9d17a25a5d77792e5360'],
+    }),
+    ('pickleshare', '0.7.5', {
+        'checksums': ['87683d47965c1da65cdacaf31c8441d12b8044cdec9aca500cd78fc2c683afca'],
+    }),
+    ('matplotlib-inline', '0.1.6', {
+        'modulename': False,
+        'checksums': ['f887e5f10ba98e8d2b150ddcf4702c1e5f8b3a20005eb0f74bfdbd360ee6f304'],
+    }),
+    ('backcall', '0.2.0', {
+        'checksums': ['5cbdbf27be5e7cfadb448baf0aa95508f91f2bbc6c6437cd9cd06e2a4c215e1e'],
+    }),
+    ('ipython', version, {
+        'modulename': 'IPython',
+        'checksums': ['0b99a2dc9f15fd68692e898e5568725c6d49c527d36a9fb5960ffbdeaa82ff7e'],
+    }),
+]
+
+sanity_check_paths = {
+    'files': ['bin/%(namelower)s'],
+    'dirs': ['lib/python%(pyshortver)s/site-packages/%(name)s'],
+}
+
+sanity_check_commands = ['%(namelower)s -h']
+
+moduleclass = 'tools'

easybuild/easyconfigs/i/inih/inih-58-GCCcore-13.3.0.eb

@@ -0,0 +1,30 @@
+easyblock = 'MesonNinja'
+
+name = 'inih'
+version = '58'
+
+homepage = 'https://dri.freedesktop.org'
+description = """Direct Rendering Manager runtime library."""
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+source_urls = ['https://github.com/benhoyt/inih/archive/refs/tags/']
+sources = ['r%(version)s.tar.gz']
+checksums = ['e79216260d5dffe809bda840be48ab0eec7737b2bb9f02d2275c1b46344ea7b7']
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('pkgconf', '2.2.0'),
+    ('Meson', '1.4.0'),
+    ('Ninja', '1.12.1'),
+]
+
+# installing manpages requires an extra build dependency (docbook xsl)
+# configopts = '-Dman-pages=disabled'
+
+sanity_check_paths = {
+    'files': ['lib/libinih.%s' % SHLIB_EXT, 'include/ini.h'],
+    'dirs': ['include', 'lib'],
+}
+
+moduleclass = 'lib'

easybuild/easyconfigs/l/libgeotiff/libgeotiff-1.7.3-GCCcore-13.3.0.eb

@@ -0,0 +1,36 @@
+easyblock = 'ConfigureMake'
+
+name = 'libgeotiff'
+version = '1.7.3'
+
+homepage = 'https://directory.fsf.org/wiki/Libgeotiff'
+description = """Library for reading and writing coordinate system information from/to GeoTIFF files"""
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+source_urls = ['https://download.osgeo.org/geotiff/libgeotiff']
+sources = [SOURCE_TAR_GZ]
+checksums = ['ba23a3a35980ed3de916e125c739251f8e3266be07540200125a307d7cf5a704']
+
+builddependencies = [
+    ('binutils', '2.42'),
+]
+
+dependencies = [
+    ('PROJ', '9.4.1'),
+    ('libjpeg-turbo', '3.0.1'),
+    ('zlib', '1.3.1'),
+    ('SQLite', '3.45.3'),
+    ('LibTIFF', '4.6.0'),
+    ('cURL', '8.7.1'),
+]
+
+configopts = ' --with-libtiff=$EBROOTLIBTIFF --with-proj=$EBROOTPROJ --with-zlib=$EBROOTZLIB'
+configopts += ' --with-jpeg=$EBROOTLIBJPEGMINTURBO'
+
+sanity_check_paths = {
+    'files': ['bin/listgeo', 'lib/libgeotiff.a', 'lib/libgeotiff.%s' % SHLIB_EXT],
+    'dirs': ['include', 'share'],
+}
+
+moduleclass = 'lib'