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cbrueffer/README.md

Christian Brueffer – Bioinformatics and Data Science Consultant 🧬

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I'm a bioinformatics and data science consultant available for hire through my company InSilico Consulting AB. Based in Lund, Sweden, I'm conveniently located close to Denmark and Germany.

My focus in both academia and industry has been the exploration of cancer through genomic methods. See Google Scholar for a list of my research publications.

As an active open source software developer I focus on providing up-to-date software packages to the bioinformatics and data science community through Bioconda and conda-forge, and improving various other software projects through my contributions.

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  1. bcbio/bcbio-nextgen Public

    Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

    Python 995 353

  2. biopython/biopython Public

    Official git repository for Biopython (originally converted from CVS)

    Python 4.5k 1.8k

  3. freebsd/freebsd-src Public

    The FreeBSD src tree publish-only repository. Experimenting with 'simple' pull requests....

    C 8.1k 2.9k

  4. openbsm/openbsm Public

    OpenBSM open audit implementation

    C 164 53

  5. MutationExplorer Public

    R Shiny based lightweight mutation exploration tool

    R 3

  6. insilicoconsulting/snake-chic Public

    Snakemake wrapper around the Arima Capture Hi-C (CHiC) workflow

    Python 3

1,205 contributions in the last year

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Activity overview

Loading A graph representing cbrueffer's contributions from January 21, 2024 to January 25, 2025. The contributions are 64% commits, 31% code review, 4% pull requests, 1% issues. 31% Code review 1% Issues 4% Pull requests 64% Commits

Contribution activity

January 2025

Created 1 repository

Created a pull request in conda-forge/staged-recipes that received 4 comments

Add r-frab

Checklist Title of this PR is meaningful: e.g. "Adding my_nifty_package", not "updated meta.yaml". License file is packaged (see here for an ex…

+75 −0 lines changed 4 comments
Opened 6 other pull requests in 2 repositories
conda-forge/staged-recipes 4 merged 1 closed
nextflow-io/training 1 merged
Reviewed 34 pull requests in 32 repositories
conda-forge/r-box.linters-feedstock 2 pull requests
conda-forge/r-hdanova-feedstock 2 pull requests
conda-forge/r-mlr3inferr-feedstock 1 pull request
conda-forge/r-selenider-feedstock 1 pull request
conda-forge/r-estimability-feedstock 1 pull request
conda-forge/r-uwot-feedstock 1 pull request
conda-forge/r-brms-feedstock 1 pull request
conda-forge/r-mass-feedstock 1 pull request
conda-forge/r-future.apply-feedstock 1 pull request
conda-forge/r-gbj-feedstock 1 pull request
conda-forge/r-jskm-feedstock 1 pull request
conda-forge/r-hyper2-feedstock 1 pull request
conda-forge/r-frab-feedstock 1 pull request
conda-forge/r-tergm-feedstock 1 pull request
conda-forge/r-cutpointr-feedstock 1 pull request
conda-forge/r-flextable-feedstock 1 pull request
conda-forge/r-snpassoc-feedstock 1 pull request
conda-forge/r-mlr3tuning-feedstock 1 pull request
conda-forge/r-mlr3verse-feedstock 1 pull request
conda-forge/r-cftime-feedstock 1 pull request
conda-forge/r-mixlm-feedstock 1 pull request
conda-forge/r-rms-feedstock 1 pull request
conda-forge/r-l1pack-feedstock 1 pull request
conda-forge/r-simdesign-feedstock 1 pull request
conda-forge/r-tidyplots-feedstock 1 pull request
7 repositories not shown
5 contributions in private repositories Jan 6 – Jan 23
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