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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    HTML 2.4k 563

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 217 186

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 155 29

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    56 12

  5. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    HTML 32 11

  6. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 22 23

Repositories

Showing 10 of 51 repositories
  • snakemake-executor-plugin-aws-batch Public

    A Snakemake executor plugin for AWS Batch

    snakemake/snakemake-executor-plugin-aws-batch’s past year of commit activity
    Python 5 MIT 4 4 2 Updated Jan 25, 2025
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 217 186 28 33 Updated Jan 24, 2025
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    HTML 2,362 MIT 563 1,067 85 Updated Jan 24, 2025
  • snakemake-hpc-teaching-material Public
    snakemake/snakemake-hpc-teaching-material’s past year of commit activity
    TeX 7 CC-BY-SA-4.0 2 13 5 Updated Jan 23, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 22 MIT 23 25 2 Updated Jan 23, 2025
  • snakemake-github-action Public

    A Github action for running a Snakemake workflow

    snakemake/snakemake-github-action’s past year of commit activity
    56 MIT 12 14 0 Updated Jan 21, 2025
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    HTML 32 MIT 11 4 0 Updated Jan 20, 2025
  • snakemake-executor-plugin-slurm-jobstep Public

    A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)

    snakemake/snakemake-executor-plugin-slurm-jobstep’s past year of commit activity
    Python 0 MIT 2 1 1 Updated Jan 13, 2025
  • snakefmt Public

    The uncompromising Snakemake code formatter

    snakemake/snakefmt’s past year of commit activity
    Python 155 MIT 29 15 2 Updated Jan 8, 2025
  • snakemake-storage-plugin-irods Public

    Snakemake storage plugin for handling input and output on iRODS

    snakemake/snakemake-storage-plugin-irods’s past year of commit activity
    Python 0 MIT 2 1 2 Updated Dec 30, 2024
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