-
Notifications
You must be signed in to change notification settings - Fork 6
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Port over adapters #73
Merged
Merged
Changes from 25 commits
Commits
Show all changes
32 commits
Select commit
Hold shift + click to select a range
f36608e
Initial move of adapters.
dlrice a3338aa
Slight restructure.
dlrice 274bfbe
More restructuring.
dlrice d5a25fa
Move lots of things around.
dlrice 54990f2
Drop protvista-X and transormDataX prefixes; move types around.
dlrice 0e4b23b
Update .gitignore for yalc.
dlrice 3a60d29
Remove packages.
dlrice a998a47
Remove types already in nightingale.
dlrice d3f50e0
Fix proteomics-ptm-adapter import.
dlrice 2ef7898
Fix type imports for variants.
dlrice e26c053
Type fixes.
dlrice 7740f0c
Update test.
dlrice 8b39038
Move tests around and save as ts.
dlrice 5aebdde
Fix filter-config types.
dlrice cc9d03b
Update snapshot.
dlrice 51d651a
Remove unused code.
dlrice 4985ca7
Remove yalc references.
dlrice 36ae063
Export tooltips from index.
dlrice a8ebd5b
Tweak index.html title, remove unused d3 v4 load.
dlrice cda1741
Have lit register the web components.
dlrice ae9253e
Remove gitHead from package.json.
dlrice 0081a39
Still need loadComponent though for the individual tracks.
dlrice 2ddcf7b
Tidy up debugging statements.
dlrice 11a0992
Remove unused types and move a few others around.
dlrice a124e7e
Remove link-all and add-all package.json scripts as only yalc is used.
dlrice 7bb8e17
Remove unused DownloadConfig.
dlrice fe6d6f9
Pin color-hash version.
dlrice 7908abe
Remove data-loader from protvista-uniprot-structure.
dlrice 0651215
Create fetchAll util fn and use to replace data-loader.
dlrice 3412e06
Remove data-loader.
dlrice b2d8f9d
Remove debugging statement.
dlrice c3c779d
Remove D3 and file-saver; remove D3 peerDep; pin dep versions.
dlrice File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,16 +1,21 @@ | ||
| { | ||
| "presets": [ | ||
| [ | ||
| "@babel/preset-env", { | ||
| "@babel/preset-env", | ||
| { | ||
| "useBuiltIns": "usage", | ||
| "corejs": "3" | ||
| "corejs": "3" | ||
| } | ||
| ], | ||
| "@babel/preset-typescript" | ||
| ], | ||
| "plugins": [ | ||
| ["@babel/plugin-transform-runtime", { | ||
| [ | ||
| "@babel/plugin-transform-runtime", | ||
| { | ||
| "corejs": "3" | ||
| }] | ||
| } | ||
| ], | ||
| ["@babel/plugin-proposal-decorators", { "version": "2023-11" }] | ||
| ] | ||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -5,4 +5,6 @@ | |
| build/ | ||
| dist/ | ||
| node_modules/ | ||
| *.log | ||
| *.log | ||
| .yalc/ | ||
| yalc.lock | ||
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,76 @@ | ||
| const data = { | ||
| accession: 'P01234', | ||
| id: 'A4_HUMAN_mocked', | ||
| dbReferences: [ | ||
| { | ||
| type: 'UniGene', | ||
| id: 'Hs.434980', | ||
| }, | ||
| { | ||
| type: 'PDB', | ||
| id: '1AAP', | ||
| properties: { | ||
| method: 'X-ray', | ||
| resolution: '1.50 A', | ||
| }, | ||
| }, | ||
| { | ||
| type: 'PDB', | ||
| id: '1AMB', | ||
| properties: { | ||
| method: 'NMR', | ||
| chains: 'A=672-699', | ||
| }, | ||
| }, | ||
| { | ||
| type: 'PDB', | ||
| id: '1AMC', | ||
| properties: { | ||
| method: 'NMR', | ||
| chains: 'A=672-699', | ||
| }, | ||
| }, | ||
| { | ||
| type: 'PDB', | ||
| id: '1AML', | ||
| properties: { | ||
| method: 'NMR', | ||
| chains: 'A=672-711', | ||
| }, | ||
| }, | ||
| { | ||
| type: 'PDB', | ||
| id: '1BA4', | ||
| properties: { | ||
| method: 'NMR', | ||
| chains: 'A=672-711', | ||
| }, | ||
| }, | ||
| { | ||
| type: 'PROSITE', | ||
| id: 'PS00280', | ||
| properties: { | ||
| 'match status': '1', | ||
| 'entry name': 'BPTI_KUNITZ_1', | ||
| }, | ||
| }, | ||
| { | ||
| type: 'PROSITE', | ||
| id: 'PS50279', | ||
| properties: { | ||
| 'match status': '1', | ||
| 'entry name': 'BPTI_KUNITZ_2', | ||
| }, | ||
| }, | ||
| ], | ||
| sequence: { | ||
| version: 3, | ||
| length: 770, | ||
| mass: 86943, | ||
| modified: '1991-11-01', | ||
| sequence: | ||
| 'MLPGLALLLLAAWTARALEVPTDGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTESVEEVVREVCSEQAETGPCRAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCGSAMSQSLLKTTQEPLARDPVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHSFGADSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN', | ||
| }, | ||
| }; | ||
|
|
||
| export default data; |
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
How about just using the fixed version like the rest of them?
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Pinned all dep versions but not devDeps as I encountered webpack issues so left as is there.