-
Notifications
You must be signed in to change notification settings - Fork 10
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
IDMP-535 - Merge branch 'master' of https://github.com/edmcouncil/idmp …
…into IDMP-535 and address conflicts Signed-off-by: Elisa Kendall <ekendall@thematix.com>
- Loading branch information
Showing
105 changed files
with
17,008 additions
and
4,705 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,47 @@ | ||
# This workflow will run spellchecking for IDMP project | ||
|
||
name: IDMP Spellcheck Test | ||
|
||
on: | ||
push: | ||
pull_request: | ||
branches: ["master"] | ||
|
||
permissions: | ||
contents: read | ||
|
||
jobs: | ||
spellcheck: | ||
runs-on: ubuntu-latest | ||
steps: | ||
- uses: actions/checkout@v3 | ||
- name: Set up Python 3.10 | ||
uses: actions/setup-python@v3 | ||
with: | ||
python-version: "3.10" | ||
- name: Install dependencies | ||
run: | | ||
python -m pip install --upgrade pip | ||
pip install -r etc/testing/spelling/requirements.txt | ||
- name: Install robot | ||
run: | | ||
sudo wget --no-verbose -m -nH -nd -P /usr/bin https://raw.githubusercontent.com/ontodev/robot/master/bin/robot | ||
sudo wget --no-verbose -m -nH -nd -P /usr/bin https://github.com/ontodev/robot/releases/latest/download/robot.jar | ||
sudo chmod +x /usr/bin/robot | ||
- name: Merge all IDMP ontologies with robot | ||
run: | | ||
robot merge --input AboutIDMPDev-ReferenceIndividuals.rdf --output AboutIDMPDev-ReferenceIndividuals.ttl --catalog /home/runner/work/idmp/idmp/catalog-v001.xml | ||
- name: Run spellchecker | ||
run: | | ||
python etc/testing/spelling/onto_spellchecker.py --ontology /home/runner/work/idmp/idmp/AboutIDMPDev-ReferenceIndividuals.ttl --spell etc/testing/spelling/domain_specific_spellings.json --filter spec.pistoiaalliance.org | ||
if [ $? != 0 ]; | ||
then | ||
exit $? | ||
fi | ||
- name: Archive logfile | ||
uses: actions/upload-artifact@v3 | ||
if: always() | ||
with: | ||
name: logifle | ||
path: spellcheck_log.log | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,38 @@ | ||
<?xml version="1.0" encoding="UTF-8" standalone="no"?> | ||
<catalog xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog" prefer="public"> | ||
<uri id="8ed7afe9-aef5-41cc-b33c-9a84bc027fdb" name="https://www.omg.org/spec/Commons/AnnotationVocabulary/" uri="../AnnotationVocabulary.rdf" /> | ||
<uri id="d4d02968-0f5e-4c32-ac56-2fd8b47111bf" name="https://www.omg.org/spec/Commons/AsianJurisdiction/WesternAsiaGovernmentEntitiesAndJurisdictions/" uri="../AsianJurisdiction/WesternAsiaGovernmentEntitiesAndJurisdictions.rdf" /> | ||
<uri id="15a1efae-4df1-4736-9b8a-adf3e392fe3d" name="https://www.omg.org/spec/Commons/Classifiers/" uri="../Classifiers.rdf" /> | ||
<uri id="9a8379a1-2ec9-477c-b4a6-0cf746afacc8" name="https://www.omg.org/spec/Commons/CodesAndCodeSets/" uri="../CodesAndCodeSets.rdf" /> | ||
<uri id="479347ac-ee5e-4ac2-9565-65285dece0ca" name="https://www.omg.org/spec/Commons/Collections/" uri="../Collections.rdf" /> | ||
<uri id="User Entered Import Resolution" name="https://www.omg.org/spec/Commons/RolesAndCompositions/" uri="../RolesAndCompositions.rdf"/> | ||
<uri id="236fa49c-2305-4cee-b3b4-8b11932b69b4" name="https://www.omg.org/spec/Commons/ContextualDesignators/" uri="../ContextualDesignators.rdf" /> | ||
<uri id="97fe73fd-23ac-499f-aa10-9ffd83db1220" name="https://www.omg.org/spec/Commons/ContextualIdentifiers/" uri="../ContextualIdentifiers.rdf" /> | ||
<uri id="c7507de1-ae84-4bb5-b5a8-ff4a1f5e751b" name="https://www.omg.org/spec/Commons/DatesAndTimes/" uri="../DatesAndTimes.rdf" /> | ||
<uri id="242453c2-c0b3-4fba-ab3b-8d5291b5d3f2" name="https://www.omg.org/spec/Commons/Designators/" uri="../Designators.rdf" /> | ||
<uri id="9ceda4c2-d336-4fab-9322-ba57bbcf7404" name="https://www.omg.org/spec/Commons/Documents/" uri="../Documents.rdf" /> | ||
<uri id="db68eaba-d238-4b68-bbeb-a5abec6f5b0c" name="https://www.omg.org/spec/Commons/EuropeanJurisdiction/EasternEuropeGovernmentEntitiesAndJurisdictions/" uri="../EuropeanJurisdiction/EasternEuropeGovernmentEntitiesAndJurisdictions.rdf" /> | ||
<uri id="21804c88-6b93-429c-9300-bd3b5bf257e5" name="https://www.omg.org/spec/Commons/EuropeanJurisdiction/EUGovernmentEntitiesAndJurisdictions/" uri="../EuropeanJurisdiction/EUGovernmentEntitiesAndJurisdictions.rdf" /> | ||
<uri id="64667615-dbf3-4d11-9402-f72777c3579e" name="https://www.omg.org/spec/Commons/EuropeanJurisdiction/NorthernEuropeGovernmentEntitiesAndJurisdictions/" uri="../EuropeanJurisdiction/NorthernEuropeGovernmentEntitiesAndJurisdictions.rdf" /> | ||
<uri id="16ef2be4-e665-4b35-b495-257874fab707" name="https://www.omg.org/spec/Commons/EuropeanJurisdiction/SouthernEuropeGovernmentEntitiesAndJurisdictions/" uri="../EuropeanJurisdiction/SouthernEuropeGovernmentEntitiesAndJurisdictions.rdf" /> | ||
<uri id="5b48c004-5d20-4f82-ae39-3d8fbcb0d103" name="https://www.omg.org/spec/Commons/EuropeanJurisdiction/UKGovernmentEntitiesAndJurisdictions/" uri="../EuropeanJurisdiction/UKGovernmentEntitiesAndJurisdictions.rdf" /> | ||
<uri id="cb55761f-309f-49bc-bbf3-e712fe78a723" name="https://www.omg.org/spec/Commons/EuropeanJurisdiction/WesternEuropeGovernmentEntitiesAndJurisdictions/" uri="../EuropeanJurisdiction/WesternEuropeGovernmentEntitiesAndJurisdictions.rdf" /> | ||
<uri id="75a31fc7-4cf4-448a-ae66-64c4676ac09c" name="https://www.omg.org/spec/Commons/GovernmentEntities/" uri="../GovernmentEntities.rdf" /> | ||
<uri id="7191dd77-8051-4ae4-9cd0-af4568f99584" name="https://www.omg.org/spec/Commons/Identifiers/" uri="../Identifiers.rdf" /> | ||
<uri id="2d8323a2-7218-43d7-9551-da62f6cda487" name="https://www.omg.org/spec/Commons/Locations/" uri="../Locations.rdf" /> | ||
<uri id="a54c8306-482c-4912-9758-2716a18902d7" name="https://www.omg.org/spec/Commons/MappingDatesAndTimesToOWLTime/" uri="../MappingDatesAndTimesToOWLTime.rdf" /> | ||
<uri id="effea865-d2d6-4d72-8d47-88b502301d20" name="https://www.omg.org/spec/Commons/Organizations/" uri="../Organizations.rdf" /> | ||
<uri id="a874d4b6-3465-4834-a9db-755fa37784a5" name="https://www.omg.org/spec/Commons/PartiesAndSituations/" uri="../PartiesAndSituations.rdf" /> | ||
<uri id="82d1e8a7-ccdf-4c05-a626-d742d0679734" name="https://www.omg.org/spec/Commons/ProductsAndServices/" uri="../ProductsAndServices.rdf" /> | ||
<uri id="6be63fb4-fc66-4d02-aaa8-29be076fe3f1" name="https://www.omg.org/spec/Commons/QuantitiesAndUnits/" uri="../QuantitiesAndUnits.rdf" /> | ||
<uri id="e720db85-ca87-4e45-a3bd-c802f0d90895" name="https://www.omg.org/spec/Commons/RegistrationAuthorities/" uri="../RegistrationAuthorities.rdf" /> | ||
<uri id="b28cc417-03d3-4e1d-b3d3-658e41939d12" name="https://www.omg.org/spec/Commons/RegulatoryAgencies/" uri="../RegulatoryAgencies.rdf" /> | ||
<uri id="235b1d04-c09a-45bd-9da7-13683e7b841d" name="https://www.omg.org/spec/Commons/StatisticalMeasures/" uri="../StatisticalMeasures.rdf" /> | ||
<uri id="5fc843ca-cf16-4ea0-9977-efdd8a583c9b" name="https://www.omg.org/spec/Commons/StructuredCollections/" uri="../StructuredCollections.rdf" /> | ||
<uri id="c9def58c-9ed0-4373-bb55-2fa09eeb620d" name="https://www.omg.org/spec/Commons/TextDatatype/" uri="../TextDatatype.rdf" /> | ||
<uri id="9c8fa174-dd64-438c-9cf6-bbfe8ddd41ad" name="https://www.omg.org/spec/LCC/Countries/CountryRepresentation/" uri="../../LCC/Countries/CountryRepresentation.rdf" /> | ||
<uri id="7f4f0c9b-1f36-4d38-a8e0-c33721347d77" name="https://www.omg.org/spec/LCC/Countries/ISO3166-1-CountryCodes/" uri="../../LCC/Countries/ISO3166-1-CountryCodes.rdf" /> | ||
<uri id="d35f6b37-c010-4be1-9ac1-b8dc70a93e2f" name="https://www.omg.org/spec/LCC/Languages/ISO639-1-LanguageCodes/" uri="../../LCC/Languages/ISO639-1-LanguageCodes.rdf" /> | ||
<uri id="41c08e30-7592-46a4-946d-6ee305b7be19" name="https://www.omg.org/spec/LCC/Languages/ISO639-2-LanguageCodes/" uri="../../LCC/Languages/ISO639-2-LanguageCodes.rdf" /> | ||
<uri id="33e738ac-35b3-40a5-923b-f85406635ea1" name="https://www.omg.org/spec/LCC/Languages/LanguageRepresentation/" uri="../../LCC/Languages/LanguageRepresentation.rdf" /> | ||
</catalog> |
Oops, something went wrong.