forked from edisonomics/metabolomics_toolbox
-
Notifications
You must be signed in to change notification settings - Fork 0
pls toolbox resources
Laura C. Morris edited this page Oct 6, 2023
·
1 revision
- Before:
Install PLS-toolbox, add path of PLS-toolbox, remove path for metabolic toolbox (do the reverse thing after running pls-toolbox)
Installation follows here
currpath=path;
restoredefaultpath;
addpath(genpath("PATH/TO/INSTALLED/PLSTOOLBOX"));
addpath("OTHER/PATH/YOU/NEED");
Bin data
Read user guide here
helpful video
- Start:
>>analysis
Load data (pre-separate out test set and not load into the pls-toolbox pipeline)
Preprocessing: autoscale
Variable selection: GA (big sample), VIP (small sample)
- multi-class classification
Using dummy variable is actually possible for multi-class case in PLS-toolbox (here and here). However, the default plotting in PLS-toolbox seems not supporting multi-class coloring (for dummy variable).