ICD11 --> ORDO mappings #12
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Exploratory analysis to try to find the best way to get ORDO<->ICD11Foundation mappings.
Exploratory analysis to try to find the best way to get ORDO<->ICD11Foundation mappings.
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- Add: New release output: ordo-icd11.sssom.tsv - Completed work in mappings.py - Add: utils.py for this: This file now has several functions that are exactly the same in several repositories. Needs to be put into a package. - Update: config/icd11.sssom-metadata.yml: removed some unnecessary entries. Added necessary ones. - Add: requirements*.txt files: for installation of Python packages; and updated readme about that. - Delete: Temporary anlalysis files in src/compare_*/ - Add: icd11mms-exact-matches.sparql for querying ordo.owl for mappings. But this may not be necessary and may get removed. - Add: src/temp_compare_matches_owl_and_nomenclature.py: Temporary file for analysis for comparing Ordo->ICD11MMS exact matches from nomenclature file and from OWL release. - Bug fix: run.sh: Updated to an older version that works.
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This was referenced Apr 7, 2024
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- Delete: Unnecessary files and goals: temp analysis, getting of ordo.owl and querying it via SPARQL. - Add: SSSOM validation - Update: Replaced ad hoc SSSOM utilities with the ones from sssom-py - Add: mondo-icd11 mappings - Rename: SSSOM files: icd11 -> icd11foundation
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This was referenced Apr 22, 2024
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About
ICD11<->ORDO Mappings
See: Strategy
Here's the google sheet for Mondo->ICD11.
Changes
ORDO Mappings
Related
CC @souzadevinicius This is a PR to get ICD11Foundation<->Orphanet mappings, from Orphanet. We don't have standalone Orphanet repo, so I added them here. We can use these to get Mondo->ICD11Foundation mappings.