Fastqfilter #13648
Triggered via pull request
August 22, 2024 16:15
FernandoDuarteF
Status
Cancelled
Total duration
12m 57s
Artifacts
–
test.yml
on: pull_request
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
Annotations
58 errors and 2 warnings
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prettier
Process completed with exit code 1.
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nf-core-lint-modules (arcashla/extract)
GitHub Actions has encountered an internal error when running your job.
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nf-test (modules/nf-core/vsearch/usearchglobal, singularity)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, conda)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, conda)
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nf-test (modules/nf-core/vt/decompose, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/vt/decompose, docker_self_hosted)
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nf-test (modules/nf-core/verifybamid/verifybamid, conda)
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nf-test (modules/nf-core/verifybamid/verifybamid, conda)
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nf-test (modules/nf-core/arcashla/extract, conda)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/arcashla/extract, conda)
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nf-test (modules/nf-core/picard/positionbaseddownsamplesam, conda)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, singularity)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/picard/positionbaseddownsamplesam, conda)
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nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, singularity)
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nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, conda)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, conda)
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nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (subworkflows/nf-core/fastq_fastqc_umitools_trimgalore, docker_self_hosted)
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nf-test (modules/nf-core/vsearch/usearchglobal, conda)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/vsearch/usearchglobal, conda)
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nf-test (modules/nf-core/vsearch/fastqfilter, conda)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/multiqc, singularity)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/vsearch/fastqfilter, conda)
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nf-test (modules/nf-core/multiqc, singularity)
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nf-test (modules/nf-core/multiqc, conda)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/multiqc, conda)
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nf-test (modules/nf-core/fastqc, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/fastqc, docker_self_hosted)
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nf-test (modules/nf-core/arriba/download, singularity)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/arriba/download, singularity)
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nf-test (modules/nf-core/multiqc, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/multiqc, docker_self_hosted)
The operation was canceled.
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nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, docker_self_hosted)
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nf-test (modules/nf-core/vt/decompose, singularity)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/vt/decompose, singularity)
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nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, singularity)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (subworkflows/nf-core/fastq_fastqc_umitools_fastp, singularity)
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nf-test (modules/nf-core/arriba/download, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/arriba/download, docker_self_hosted)
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nf-test (modules/nf-core/fastqc, singularity)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/fastqc, singularity)
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nf-test (modules/nf-core/goleft/indexcov, conda)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/fastqc, conda)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/goleft/indexcov, conda)
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nf-test (modules/nf-core/fastqc, conda)
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nf-test (modules/nf-core/vsearch/usearchglobal, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/vsearch/usearchglobal, docker_self_hosted)
The operation was canceled.
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nf-test (modules/nf-core/arriba/download, conda)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/arriba/download, conda)
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nf-test (modules/nf-core/adapterremovalfixprefix, conda)
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nf-test (modules/nf-core/adapterremovalfixprefix, conda)
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nf-test (modules/nf-core/picard/positionbaseddownsamplesam, singularity)
Canceling since a higher priority waiting request for 'Run tests-6235' exists
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nf-test (modules/nf-core/picard/positionbaseddownsamplesam, singularity)
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nf-test (modules/nf-core/vcflib/vcfuniq, conda)
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nf-test (modules/nf-core/vcflib/vcfuniq, conda)
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confirm-pass
Process completed with exit code 1.
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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