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MagellanMapper v1.3.7
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@yoda-vid yoda-vid released this 10 Dec 02:48
· 1866 commits to master since this release
v1.3.7
7efe357

This is a bugfix release for MagellanMapper.

Changes

Installation

  • Fixed launch error when Javabridge is installed but Java is not

GUI

  • The "Save Figure" button opens a file save dialog to configure the location, filename, and file format of saved figures
  • Fixed display resolution on HiDPI screens set to fractional scaling (eg 150%; the fix requires Qt 5.14+)
  • Fixed Atlas Editor non-Numpy image initial loading performance (regression introduced in v1.0.0, most notably in larger images)
  • Fixed Atlas Editor to enable saving after edge interpolation

CLI

  • Configure DPI of saved images using --plot_labels dpi=<n>
  • Specify colors for NaN values through --plot_labels nan_color=<color> instead of through --atlas_labels binary=<color>, which is now only specifies colors when displaying labels as binary images to fix this display
  • Defaults to saving images in PNG format, even if --savefig <ext> is not set
  • CLI sub-arguments are now shown in ./run.py -h (help documentation)
  • Fixed saved plane filenames to use the plane index for the axis corresponding to the saved plane

Atlas refinement

  • Smoothing metrics now include the filter size in metrics output
  • Fixed the denominator in the smoothing displacement metric and smoothing metrics for non-existent labels

Python stats and plots

  • Excludes decimal points that were likely included by floating-point errors
  • Fixed mapping measurements to labels with weighting
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