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@sb-ncbr

Structural bioinformatics research group at National Centre for Biomolecular Research

Welcome to the website of the Structural bioinformatics research group. Our research group is affiliated with the National Centre for Biomolecular Research at the Faculty of Science, Masaryk University.

In our research, we focus on analysing protein structures, protein fragments, and whole protein families. Specifically, we visualise, validate, and annotate protein structures, detect protein channels and fragments, and calculate the properties of proteins. In parallel, we also develop software tools for performing these analyses. Our software is integrated into key structural bioinformatics databases such as Protein Data Bank and CATH.

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  1. AlphaCharges AlphaCharges Public

    𝛂Charges: A tool for the quick calculation of partial atomic charges for protein structures from AlphaFoldDB

    Python 10 2

  2. ChargeFW2 ChargeFW2 Public

    The core part of Atomic Charge Calculator II.

    C++ 27 13

  3. overprot overprot Public

    OverProt creates an overview of secondary structure elements in protein families.

    Jupyter Notebook 2

  4. SecStrAnnotator2 SecStrAnnotator2 Public

    SecStrAnnotator is a software tool for annotation (naming) of secondary structure elements.

    Jupyter Notebook 3

  5. channelsdb channelsdb Public

    ChannelsDB 2 - a comprehensive and regularly updated resource of channels, pores and tunnels

    JavaScript 2

Repositories

Showing 10 of 45 repositories
  • c1473-public Public

    Výukové materiály pro předmět PřF:C1473

    sb-ncbr/c1473-public’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jan 9, 2025
  • moleonline-web Public

    MOLEonline is a fast service for calculating tunnels and pores in biomacromolecular structures

    sb-ncbr/moleonline-web’s past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Dec 20, 2024
  • PDBCharges_website Public

    PDBCharges is a web application providing partial atomic charges of protein structures from the Protein Data Bank.

    sb-ncbr/PDBCharges_website’s past year of commit activity
    HTML 0 MIT 1 0 0 Updated Dec 19, 2024
  • AlphaCharges Public

    𝛂Charges: A tool for the quick calculation of partial atomic charges for protein structures from AlphaFoldDB

    sb-ncbr/AlphaCharges’s past year of commit activity
    Python 10 MIT 2 0 0 Updated Dec 19, 2024
  • PDBCharges Public
    sb-ncbr/PDBCharges’s past year of commit activity
    Python 1 1 0 0 Updated Dec 17, 2024
  • channelsdb Public

    ChannelsDB 2 - a comprehensive and regularly updated resource of channels, pores and tunnels

    sb-ncbr/channelsdb’s past year of commit activity
    JavaScript 0 MIT 2 0 0 Updated Nov 26, 2024
  • RBP-Tar Public

    RBP-Tar is a web server for the retrieval of experimentally derived binding sites for hundreds of RNA Binding Proteins on the human genome.

    sb-ncbr/RBP-Tar’s past year of commit activity
    HTML 1 MIT 1 0 1 Updated Nov 13, 2024
  • ChargeFW2 Public

    The core part of Atomic Charge Calculator II.

    sb-ncbr/ChargeFW2’s past year of commit activity
    C++ 27 MIT 13 5 3 Updated Nov 1, 2024
  • AtomicChargeCalculator2 Public

    Atomic Charge Calculator II (ACC II) is an application for fast calculation of partial atomic charges.

    sb-ncbr/AtomicChargeCalculator2’s past year of commit activity
    TeX 12 MIT 6 0 0 Updated Sep 26, 2024
  • metadata-extractors Public

    Metadata exctractors for various types of data

    sb-ncbr/metadata-extractors’s past year of commit activity
    Python 0 0 0 0 Updated Jul 24, 2024

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